Updated notebooks, added model verification nb

Author: BSchilperoort

notebooks/run_model_in_notebook.ipynb

@@ -46,7 +46,7 @@
     "# path to config file\n",
     "path_to_config_file = \"path_to_config_file\"\n",
     "# Instantiate working directories handler from PyStemmusScope\n",
-    "config = PyStemmusScope.read_config(path_to_config_file)"
+    "config_template = PyStemmusScope.read_config(path_to_config_file)"
    ]
   },
   {
@@ -79,7 +79,7 @@
     }
    ],
    "source": [
-    "config"
+    "config_template"
    ]
   },
   {
@@ -113,8 +113,8 @@
    ],
    "source": [
     "# edit config\n",
-    "config[\"NumberOfTimeSteps\"] = \"5\"\n",
-    "config"
+    "config_template[\"NumberOfTimeSteps\"] = \"5\"\n",
+    "config_template"
    ]
   },
   {
@@ -145,15 +145,20 @@
     "\n",
     "full_run = False\n",
     "if full_run:\n",
-    "    forcing_filenames_list = [file.name for file in Path(config[\"ForcingPath\"]).iterdir()]\n",
+    "    forcing_filenames_list = [file.name for file in Path(config_template[\"ForcingPath\"]).iterdir()]\n",
     "\n",
     "# empty dict to store path to config file and work directory for each station\n",
     "config_path_dict = {}\n",
     "input_dir_dict = {}\n",
     "for nc_file in forcing_filenames_list:\n",
-    "    input_dir, output_dir, config_path = PyStemmusScope.create_io_dir(nc_file, config)\n",
+    "    input_dir, output_dir, config_path = PyStemmusScope.create_io_dir(nc_file, config_template)\n",
     "    config_path_dict[nc_file] = config_path\n",
     "    input_dir_dict[nc_file] = input_dir\n",
+    "    \n",
+    "    config_run = PyStemmusScope.read_config(config_path)\n",
+    "\n",
+    "    forcing_io.prepare_forcing(input_dir, Path(config_run[\"ForcingPath\"]) / nc_file, config_run)\n",
+    "    \n",
     "    print(input_dir, output_dir, config_path)"
    ]
   },
@@ -277,7 +282,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.12"
+   "version": "3.9.13"
   }
  },
  "nbformat": 4,

notebooks/run_model_in_notebook_dev.ipynb

@@ -98,7 +98,7 @@
     "# path to config file\n",
     "path_to_config_file = \"path_to_config_file\"\n",
     "# Instantiate working directories handler from PyStemmusScope\n",
-    "config = PyStemmusScope.read_config(path_to_config_file)"
+    "config_template = PyStemmusScope.read_config(path_to_config_file)"
    ]
   },
   {
@@ -131,7 +131,7 @@
     }
    ],
    "source": [
-    "config"
+    "config_template"
    ]
   },
   {
@@ -165,8 +165,8 @@
    ],
    "source": [
     "# edit config\n",
-    "config[\"NumberOfTimeSteps\"] = \"5\"\n",
-    "config"
+    "config_template[\"NumberOfTimeSteps\"] = \"5\"\n",
+    "config_template"
    ]
   },
   {
@@ -191,9 +191,20 @@
    ],
    "source": [
     "# specify the forcing filename\n",
-    "forcing_filename = config[\"ForcingFileName\"]\n",
-    "input_dir, output_dir, config_path = PyStemmusScope.create_io_dir(forcing_filename, config)\n",
-    "print(input_dir, output_dir, config_path)"
+    "forcing_filename = config_template[\"ForcingFileName\"]\n",
+    "input_dir, output_dir, config_run_path = PyStemmusScope.create_io_dir(forcing_filename, config_template)\n",
+    "print(input_dir, output_dir, config_run_path)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "config_run = PyStemmusScope.read_config(config_run_path)\n",
+    "# Generate the forcing input data for STEMMUS_SCOPE\n",
+    "forcing_io.prepare_forcing(input_dir, Path(config_run[\"ForcingPath\"]) / forcing_filename, config_run)"
    ]
   },
   {
@@ -379,7 +390,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.12"
+   "version": "3.9.13"
   },
   "metadata": {
    "interpreter": {