adjust BMI_MODFLOW notebook

Author: Mostafa Daoud

docs/notebooks/bmi_MODFLOW_coupling.ipynb

@@ -13,7 +13,7 @@
     "- The executable files of both models. \n",
     "    - STEMMUS_SCOPE executable file can be retrieved from the link (https://github.com/EcoExtreML/STEMMUS_SCOPE/blob/main/run_model_on_snellius/exe/STEMMUS_SCOPE). Note: the STEMMUS_SCOPE executable file is Linux-based only.\n",
     "    - MODFLOW 6 executable files can be retrieved from the link (https://github.com/MODFLOW-USGS/modflow6/releases). Note: This notebook is based on MODFLOW 6.5.0 (Linux version). \n",
-    "- The input files of both models are already prepared in advance and are not part of this notebook. The input data files can be accessed via this link (https://zenodo.org/records/13354850). The link also includes a version of the executable files needed to run the models. Download, unzip and copy the folders to your own working directory (root directory, see below the cell under the header: *1. Set up the root directory*).\n",
+    "- The input files of both models are already prepared in advance and are not part of this notebook. The input data files can be accessed via this link (https://zenodo.org/records/13464164). The link also includes: 1) a version of the executable files needed to run the models. Download, unzip and copy the folders to your own working directory (root directory, see below the cell under the header: *1. Set up the root directory*), and 2) a notebook for creating the MODFLOW model files of this example.\n",
     " \n",
     "In case the user wants to test the notebook on another site, preparing input files for both models is required. Preparing input files for STEMMUS_SCOPE can be done through the PyStemmusScope Python package (https://pystemmusscope.readthedocs.io/en/latest/notebooks/run_model_on_different_infra/). Preparing input files for MODFLOW 6 can be done through the FloPy Python package (https://flopy.readthedocs.io/en/stable/tutorials.html#modflow-6).\n",
     "\n",
@@ -89,7 +89,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "stemmus_scope_workspace = os.path.join(root, 'stsc_input', 'NL-Loo_2024-08-12-1341')\n",
+    "stemmus_scope_workspace = os.path.join(root, 'input', 'NL-Loo_2024-08-12-1341')\n",
     "stemmus_scope_config_file = os.path.join(stemmus_scope_workspace, \"NL-Loo_2024-08-12-1341_config.txt\")"
    ]
   },
@@ -151,7 +151,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "modflow_workspace = os.path.join(root, 'mf6_model_base')\n",
+    "modflow_workspace = os.path.join(root, 'mf6_model')\n",
     "modflow_exe_file = os.path.join(executables_workspace, \"libmf6.so\")  # for window -> \"libmf6.dll\""
    ]
   },