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33# MEArec: Fast and customizable simulation of extracellular recordings on Multi-Electrode-Arrays
44
55MEArec is a package for generating biophysical extracellular neural recording on Multi-Electrode Arrays (MEA). The recording generations combines a Extracellular Action Potentials (EAP) templates generation and spike trains generation. The recordings are built by convoluting and modulating EAP templates with spike trains and adding noise.
66
77To clone this repo open your terminal and run:
88
9- ` git clone https://github.com/alejoe91 /MEArec.git `
9+ ` git clone https://github.com/SpikeInterface /MEArec.git `
1010
1111## Installation
1212
Original file line number Diff line number Diff line change @@ -77,7 +77,7 @@ allows the user to specify which strings to look for in the cell model name (fr
7777the excitatory or inhibitory set. In this example from L5 cells, all cells contining LBC (Large Basket Cells) will be
7878marked as inhibitory, and so on.
7979If you use custom cell models, you should overwrite this section as shown in
80- `this notebook <https://github.com/alejoe91 /MEArec/blob/master/notebooks/generate_recordings_with_allen_models.ipynb >`_
80+ `this notebook <https://github.com/SpikeInterface /MEArec/blob/master/notebooks/generate_recordings_with_allen_models.ipynb >`_
8181using cell models from `Allen database <https://celltypes.brain-map.org/ >`_.
8282
8383Cell-types parameters section summary
Original file line number Diff line number Diff line change @@ -12,7 +12,7 @@ If you want to install from sources and be updated with the latest development y
1212
1313.. code-block :: python
1414
15- git clone https:// github.com/ alejoe91 / MEArec
15+ git clone https:// github.com/ SpikeInterface / MEArec
1616 cd MEArec
1717 pip install - e .
1818
Original file line number Diff line number Diff line change @@ -36,7 +36,7 @@ The :code:`recgen` is a :code:`RecordingGenerator` objects and contains the foll
3636* spike_traces: (n_spiketrains, n_samples) clean spike trace for each spike train
3737* info: dictionary with parameters used
3838
39- There are several notebooks available `here <https://github.com/alejoe91 /MEArec/tree/master/notebooks >`_
39+ There are several notebooks available `here <https://github.com/SpikeInterface /MEArec/tree/master/notebooks >`_
4040that show MEArec applications.
4141
4242Plotting
Original file line number Diff line number Diff line change @@ -57,8 +57,8 @@ exclude = ["MEArec.*.tests"]
5757line-length = 120
5858
5959[project .urls ]
60- homepage = " https://github.com/alejoe91 /MEArec"
61- repository = " https://github.com/alejoe91 /MEArec"
60+ homepage = " https://github.com/SpikeInterface /MEArec"
61+ repository = " https://github.com/SpikeInterface /MEArec"
6262documentation = " https://mearec.readthedocs.io/"
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