Dockerfile

FROM python:3.12

LABEL maintainer="Vincent Prevosto <prevosto@mit.edu>"

# Ubuntu package installs
RUN apt update && \
    apt install -y --no-install-recommends \
    git \
    nano && \
    apt clean && \
    rm -rf /var/lib/apt/lists/*

# Install dependencies
RUN pip install \
    numpy \
    scipy \
    matplotlib \
    PyWavelets \
    tables \
    pyqt5 \
    ipython

# Clone Combinato
WORKDIR /src
RUN git clone https://github.com/jniediek/combinato.git

# Add Combinato repository to paths
ENV COMBINATO_PATH=/src/combinato
ENV PATH=$PATH:$COMBINATO_PATH
ENV PYTHONPATH=/usr/local/bin/python3:$COMBINATO_PATH
RUN echo '\n\
export PATH=$PATH:/src/combinato\n\
export PYTHONPATH=$PYTHONPATH:/usr/local/bin/python3:/src/combinato\n\
export COMBINATO_PATH=/src/combinato' >> /root/.bashrc

RUN pip install "numpy<2"  # Ensure compatibility with Combinato

# Install Combinato
WORKDIR /src/combinato
RUN python3 setup_options.py