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adds new remote to allow removal of sync_channel
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pykilosort/README.md

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@@ -35,5 +35,5 @@ from pykilosort import run, add_default_handler, np1_probe, np2_probe
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data_path = Path('/data/Allen_Institute_NP1/continuous_1min.bin')
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dir_path = Path('/data/Allen_Institute_NP1/pyKS_output')
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add_default_handler(level='INFO') # print output as the algorithm runs
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run(data_path, dir_path=dir_path, probe=np1_probe())
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run(data_path, dir_path=dir_path, probe=np1_probe(sync_channel=False))
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```

pykilosort/dockerfiles/Dockerfile.testing

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@@ -37,6 +37,8 @@ RUN conda init bash
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# Install python port of pykilosort
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RUN git clone -b drift_test_stable https://github.com/kushbanga/pykilosort.git /src/pykilosort
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WORKDIR /src/pykilosort
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RUN git remote add MouseLand https://github.com/MouseLand/pykilosort.git && \
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git fetch MouseLand && git checkout MouseLand/develop && git checkout -b develop
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# Create environment
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RUN conda env create -f pyks2.yml

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