spikeinterface/.github/workflows/test_zarr_compat.yml at 39a75883f71dadeaa294ceb2db8a59a94be33b71 · SpikeInterface/spikeinterface · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
name: Test zarr backwards compatibility

on:
  workflow_dispatch:
  pull_request:
    types: [synchronize, opened, reopened]
    branches:
      - main
    paths:
      - "src/spikeinterface/core/zarrextractors.py"
      - "src/spikeinterface/core/zarrrecordingextractor.py"
      - "src/spikeinterface/core/tests/test_zarr_backwards_compat.py"
      - ".github/workflows/test_zarr_compat.yml"
      - ".github/scripts/generate_zarr_v2_fixtures.py"

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

jobs:
  test-zarr-compat:
    name: zarr v2 -> v3 backwards compatibility
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: "3.11"

      - name: Install SI 0.104.0 with zarr v2
        run: pip install "spikeinterface==0.104.0" "zarr<3"

      - name: Generate zarr v2 fixtures
        run: python .github/scripts/generate_zarr_v2_fixtures.py --output /tmp/zarr_v2_fixtures

      - name: Install current SI with zarr v3
        run: pip install -e ".[test_core]"

      - name: Check zarr version is v3
        run: python -c "import zarr; v = zarr.__version__; print(f'zarr {v}'); assert int(v.split('.')[0]) >= 3"

      - name: Run backward compatibility tests
        env:
          ZARR_V2_FIXTURES_PATH: /tmp/zarr_v2_fixtures
        run: pytest src/spikeinterface/core/tests/test_zarr_backwards_compat.py -v