Merge branch 'amusecode:main' into iss9-arepo_dark_matter_interface

Author: rieder

.github/workflows/python-package.yml

@@ -0,0 +1,48 @@
+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: Python package
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    branches: [ "main" ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.8", "3.9", "3.10"]
+
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v3
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        python -m pip install flake8 pytest
+        # don't install requirements.txt as mpi4py will fail...
+        # if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+        python -m pip install setuptools setuptools_scm wheel docutils numpy h5py
+    - name: Lint with flake8
+      run: |
+        # stop the build if there are Python syntax errors or undefined names
+        flake8 src/amuse/. --count --select=E9,F63,F7,F82 --show-source --statistics
+        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+        flake8 src/amuse/. --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+    - name: Install framework
+      run: |
+        python -m pip install -e .
+    - name: Test with pytest (only core tests)
+      run: |
+        pytest src/amuse/test/suite/core_tests
+    - name: Create packages
+      run: |
+        cd packages && sh generate_packages.sh

.gitignore

@@ -1,5 +1,4 @@
 # files generated by the configure script
-build.py
 config.log
 config.mk
 config.status

.zenodo.json

@@ -18,7 +18,7 @@
             "name": "McMillan, Steve"
         },
         {
-            "affiliation": "University of Exeter",
+            "affiliation": "Université de Genève",
             "name": "Rieder, Steven",
             "orcid": "0000-0003-3688-5798"
         },

Makefile.in

@@ -11,12 +11,12 @@ python_version_major := $(word 1,${python_version_full})
 python_version_minor := $(word 2,${python_version_full})
 python_version_patch := $(word 3,${python_version_full})
 
-all: build.py
+all: config.mk
 	@-mkdir -p test_results
 	$(PYTHON) setup.py generate_main
 	$(PYTHON) setup.py build_codes --inplace
 
-framework: build.py
+framework: config.mk
 	@-mkdir -p test_results
 	$(PYTHON) setup.py generate_main
 	$(PYTHON) setup.py build_libraries --inplace
@@ -46,7 +46,7 @@ distclean:
 	-rm -f amuse.sh
 	-rm -f iamuse.sh
 	-rm -f ibis-deploy.sh
-	-rm -f build.py bin/amusifier
+	-rm -f bin/amusifier
 	-rm -rf test_results src/amuse.egg-info
 
 	-rm -f test/*.000 test/fort.* test/perr test/pout test/test.h5 test/*.log