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final revision of tut con but before class (#1562)
Co-authored-by: Giovanni Volpe <46021832+giovannivolpe@users.noreply.github.com>
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tutorials/pipelines/tut_a_con_but/tut_a_con_but.tex

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@@ -44,7 +44,7 @@ \section{Generate Example Data}
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\section{Open the GUI}
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The general GUI of BRAPH 2.0 can be opened by typing \code{braph2} in MatLab's terminal. This GUI allows you to select a pipeline, in this case, \emph{Pipeline Connectivity Comparison BUT}, as shown in \Figref{fig:02}
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The general GUI of BRAPH 2.0 can be opened by typing \code{braph2} in MatLab's terminal. This GUI allows you to select a pipeline, in this case, \emph{Pipeline Connectivity Comparison BUT}, as shown in \Figref{fig:02}.
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\fig{figure}
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{fig:02}
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\clearpage
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\section{Step 3: Analyzing the Data of Group 1}
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Once you have loaded the data for both groups, you can begin analyzing the data for the first group by clicking on \fn{Analyze Group 1} (\Figref{fig:06}a).
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Once you have loaded the data for both groups, you can begin analyzing the data for the first group by clicking on \fn{Analyze Group 1} (\Figref{fig:05}a).
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This will open a new interface called \fn{Analyze Ensemble}, which allows you to calculate and visualize graph measures for the first group.
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Before these network measures are calculated, it is important to ensure the following things:
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\begin{enumerate}
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\item The analysis parameters are set correctly (e.g., the thresolds).
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\item The analysis parameters are set correctly (e.g., the thresholds).
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\item The graph parameters are set correctly.
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\item The measures are configured with the parameters you desire (note that not all measures have parameters).
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\end{enumerate}
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If you have enabled the progress bar and verbose functions, two additional windows will appear to display the progress of the comparison calculations. Finally, there is an option in this GUI to save intermediate results during the permutations, which can be helpful for further analysis.
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To obtain the results from the comparisons, select the measures in the \code{COMPARISONS} panel and press \code{Data Selected Comparisons}({\Figref{fig:11}d}), and a new window will open where we can check the value of the difference between groups, the p-values (1-tailed and 2-tailed), as well as the confidence intervals.
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To obtain the results from the comparisons, select the measures in the \code{COMPARISONS} panel and press \code{Data Selected Comparisons} ({\Figref{fig:11}d}), and a new window will open where we can check the value of the difference between groups, the p-values (1-tailed and 2-tailed), as well as the confidence intervals.
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\fig{figure*}
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{fig:12}

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