update description of connectivity and functional multiplex pipelines

annacanal · annacanal · commit 21fe5d81c492 · 2023-04-21T20:00:48.000+02:00
diff --git a/braph2genesis/pipelines/connectivity multiplex group_average/pipeline_connectivity_multiplex_group_analysis_wu.braph2 b/braph2genesis/pipelines/connectivity multiplex group_average/pipeline_connectivity_multiplex_group_analysis_wu.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to analyze a group of subjects using connectivity multiplex data averaged by group and a weighted undirected graph.
 % 1. It loads a brain atlas from an XLS file (e.g., desikan_atlas.xlsx).
-% 2.1 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the data using connectivity multiplex analysis (CON_MP) based on weighted undirected graphs (WU) averaged by group (GA).
 
 %% Brain Atlas
diff --git a/braph2genesis/pipelines/connectivity multiplex/pipeline_connectivity_multiplex_analysis_bud.braph2 b/braph2genesis/pipelines/connectivity multiplex/pipeline_connectivity_multiplex_analysis_bud.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to analyze a group of subjects using connectivity multiplex data and a binary undirected graph at fixed densities.
 % 1. It loads a brain atlas from an XLS file (e.g., aal90_atlas.xlsx).
-% 2.1 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the data using connectivity multiplex analysis (CON_MP) based on a binary undirected graph at fixed densities (BUD).
 
 %% Brain Atlas
diff --git a/braph2genesis/pipelines/connectivity multiplex/pipeline_connectivity_multiplex_analysis_but.braph2 b/braph2genesis/pipelines/connectivity multiplex/pipeline_connectivity_multiplex_analysis_but.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to analyze a group of subjects using connectivity multiplex data and a binary undirected graph at fixed thresholds.
 % 1. It loads a brain atlas from an XLS file (e.g., aal90_atlas.xlsx).
-% 2.1 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the data using connectivity multiplex analysis (CON_MP) based on a binary undirected graph at fixed thresholds (BUT).
 
 %% Brain Atlas
diff --git a/braph2genesis/pipelines/connectivity multiplex/pipeline_connectivity_multiplex_analysis_wu.braph2 b/braph2genesis/pipelines/connectivity multiplex/pipeline_connectivity_multiplex_analysis_wu.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to analyze a group of subjects using connectivity multiplex data and a weighted undirected graph.
 % 1. It loads a brain atlas from an XLS file (e.g., aal90_atlas.xlsx).
-% 2.1 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the data using connectivity multiplex analysis (CON_MP) based on weighted undirected graphs (WU).
 
 %% Brain Atlas
diff --git a/braph2genesis/pipelines/connectivity multiplex/pipeline_connectivity_multiplex_comparison_bud.braph2 b/braph2genesis/pipelines/connectivity multiplex/pipeline_connectivity_multiplex_comparison_bud.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to compare two groups of subjects using connectivity multiplex data and binary undirected graphs at fixed densities.
 % 1. It loads a brain atlas from an XLS file (e.g., aal90_atlas.xlsx).
-% 2.1 It loads the connectivity data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the connectivity data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the connectivity data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the first group using connectivity multiplex analyses (CON_MP) based on binary undirected graphs at fixed densities (BUD).
 % 4. It analyzes the second group using the same parameters selected for the first group.
 % 5. It compares the results of the two analyses.
diff --git a/braph2genesis/pipelines/connectivity multiplex/pipeline_connectivity_multiplex_comparison_but.braph2 b/braph2genesis/pipelines/connectivity multiplex/pipeline_connectivity_multiplex_comparison_but.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to compare two groups of subjects using connectivity multiplex data and binary undirected graphs at fixed thresholds.
 % 1. It loads a brain atlas from an XLS file (e.g., aal90_atlas.xlsx).
-% 2.1 It loads the connectivity data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the connectivity data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the connectivity data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the first group using connectivity multiplex analyses (CON_MP) based on binary undirected graphs at fixed thresholds (BUT).
 % 4. It analyzes the second group using the same parameters selected for the first group.
 % 5. It compares the results of the two analyses.
diff --git a/braph2genesis/pipelines/connectivity multiplex/pipeline_connectivity_multiplex_comparison_wu.braph2 b/braph2genesis/pipelines/connectivity multiplex/pipeline_connectivity_multiplex_comparison_wu.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to compare two groups of subjects using connectivity multiplex data and weighted graphs.
 % 1. It loads a brain atlas from an XLS file (e.g., aal90_atlas.xlsx).
-% 2.1 It loads the connectivity data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the connectivity data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the connectivity data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the first group using connectivity multiplex analyses (CON_MP) based on weighted graphs (WU).
 % 4. It analyzes the second group using the same parameters selected for the first group.
 % 5. It compares the results of the two analyses.
diff --git a/braph2genesis/pipelines/connectivity ordered_multiplex group_average/pipeline_connectivity_ordmultiplex_group_analysis_wu.braph2 b/braph2genesis/pipelines/connectivity ordered_multiplex group_average/pipeline_connectivity_ordmultiplex_group_analysis_wu.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to analyze a group of subjects using connectivity ordinal multiplex data and a weighted undirected graph.
 % 1. It loads a brain atlas from an XLS file (e.g., aal90_atlas.xlsx).
-% 2.1 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the data using connectivity ordered-multiplex analysis (CON_OMP) based on weighted undirected graphs (WU) with group averaging (GA).
 
 %% Brain Atlas
diff --git a/braph2genesis/pipelines/connectivity ordered_multiplex/pipeline_connectivity_ordered_multiplex_analysis_wu.braph2 b/braph2genesis/pipelines/connectivity ordered_multiplex/pipeline_connectivity_ordered_multiplex_analysis_wu.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to analyze a group of subjects using connectivity ordinal multiplex data and a weighted undirected graph.
 % 1. It loads a brain atlas from an XLS file (e.g., aal90_atlas.xlsx).
-% 2.1 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the data using connectivity ordered-multiplex analysis (CON_MP) based on weighted undirected graphs (WU).
 
 %% Brain Atlas
diff --git a/braph2genesis/pipelines/functional multiplex group_average/pipeline_functional_multiplex_group_analysis_wu.braph2 b/braph2genesis/pipelines/functional multiplex group_average/pipeline_functional_multiplex_group_analysis_wu.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to analyze a group of subjects using functional multiplex data averaged by group and a weighted undirected graph.
 % 1. It loads a brain atlas from an XLS file (e.g., desikan_atlas.xlsx).
-% 2.1 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the functional data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the functional data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the data using functional multiplex analysis (FUN_MP) based on weighted undirected graphs (WU) averaged by group (GA).
 
 %% Brain Atlas
diff --git a/braph2genesis/pipelines/functional multiplex/pipeline_functional_multiplex_analysis_bud.braph2 b/braph2genesis/pipelines/functional multiplex/pipeline_functional_multiplex_analysis_bud.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to analyze a group of subjects using functional multiplex data and a binary undirected graph at fixed densities.
 % 1. It loads a brain atlas from an XLS file (e.g., aal90_atlas.xlsx).
-% 2.1 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the functional data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the functional data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the data using functional multiplex analysis (FUN_MP) based on a binary undirected graph at fixed densities (BUD).
 
 %% Brain Atlas
diff --git a/braph2genesis/pipelines/functional multiplex/pipeline_functional_multiplex_analysis_but.braph2 b/braph2genesis/pipelines/functional multiplex/pipeline_functional_multiplex_analysis_but.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to analyze a group of subjects using functional multiplex data and a binary undirected graph at fixed thresholds.
 % 1. It loads a brain atlas from an XLS file (e.g., aal90_atlas.xlsx).
-% 2.1 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the functional data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the functional data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the data using functional multiplex analysis (FUN_MP) based on a binary undirected graph at fixed thresholds (BUT).
 
 %% Brain Atlas
diff --git a/braph2genesis/pipelines/functional multiplex/pipeline_functional_multiplex_analysis_wu.braph2 b/braph2genesis/pipelines/functional multiplex/pipeline_functional_multiplex_analysis_wu.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to analyze a group of subjects using functional multiplex data and a weighted undirected graph.
 % 1. It loads a brain atlas from an XLS file (e.g., aal90_atlas.xlsx).
-% 2.1 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the functional data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the functional data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the data using functional multiplex analysis (FUN_MP) based on weighted undirected graphs (WU).
 
 %% Brain Atlas
diff --git a/braph2genesis/pipelines/functional multiplex/pipeline_functional_multiplex_comparison_bud.braph2 b/braph2genesis/pipelines/functional multiplex/pipeline_functional_multiplex_comparison_bud.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to compare two groups of subjects using functional multiplex data and binary undirected graphs at fixed densities.
 % 1. It loads a brain atlas from an XLS file (e.g., aal90_atlas.xlsx).
-% 2.1 It loads the connectivity data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the functional data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the functional data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the first group using functional multiplex analyses (FUN_MP) based on binary undirected graphs at fixed densities (BUD).
 % 4. It analyzes the second group using the same parameters selected for the first group.
 % 5. It compares the results of the two analyses.
diff --git a/braph2genesis/pipelines/functional multiplex/pipeline_functional_multiplex_comparison_but.braph2 b/braph2genesis/pipelines/functional multiplex/pipeline_functional_multiplex_comparison_but.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to compare two groups of subjects using functional multiplex data and binary undirected graphs at fixed thresholds.
 % 1. It loads a brain atlas from an XLS file (e.g., aal90_atlas.xlsx).
-% 2.1 It loads the connectivity data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the functional data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the functional data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the first group using functional multiplex analyses (FUN_MP) based on binary undirected graphs at fixed thresholds (BUT).
 % 4. It analyzes the second group using the same parameters selected for the first group.
 % 5. It compares the results of the two analyses.
diff --git a/braph2genesis/pipelines/functional multiplex/pipeline_functional_multiplex_comparison_wu.braph2 b/braph2genesis/pipelines/functional multiplex/pipeline_functional_multiplex_comparison_wu.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to compare two groups of subjects using functional multiplex data and weighted graphs.
 % 1. It loads a brain atlas from an XLS file (e.g., aal90_atlas.xlsx).
-% 2.1 It loads the connectivity data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the functional data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the functional data of two groups of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the first group using functional multiplex analyses (FUN_MP) based on weighted graphs (WU).
 % 4. It analyzes the second group using the same parameters selected for the first group.
 % 5. It compares the results of the two analyses.
diff --git a/braph2genesis/pipelines/functional ordered_multiplex group_average/pipeline_functional_ordmultiplex_group_analysis_wu.braph2 b/braph2genesis/pipelines/functional ordered_multiplex group_average/pipeline_functional_ordmultiplex_group_analysis_wu.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to analyze a group of subjects using functional ordered-multiplex data and a weighted undirected graph.
 % 1. It loads a brain atlas from an XLS file (e.g., desikan_atlas.xlsx).
-% 2.1 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the functional data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the functional data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the data using functional ordered-multiplex analysis (FUN_OMP) based on weighted undirected graphs (WU) with group averaging (GA).
 
 %% Brain Atlas
diff --git a/braph2genesis/pipelines/functional ordered_multiplex/pipeline_functional_ordered_multiplex_analysis_wu.braph2 b/braph2genesis/pipelines/functional ordered_multiplex/pipeline_functional_ordered_multiplex_analysis_wu.braph2
@@ -2,8 +2,7 @@
 
 % This is the pipeline script to analyze a group of subjects using functional ordinal multiplex data and a weighted undirected graph.
 % 1. It loads a brain atlas from an XLS file (e.g., desikan_atlas.xlsx).
-% 2.1 It loads the connectivity data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
-% 2.2 It loads the functional data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
+% 2. It loads the functional data of one group of subjects from two directories (e.g., GroupName1 and GroupName2) containing XLS files of each subject.
 % 3. It analyzes the data using functional ordered-multiplex analysis (FUN_OMP) based on weighted undirected graphs (WU).
 
 %% Brain Atlas
