samseg/.github/workflows/linux.yml at dev · freesurfer/samseg · GitHub

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name: Linux Build

on:
  push:
    branches: [ dev, itk_update ]
    tags:
      - '*'
  pull_request:
    branches: [ dev ]
  workflow_dispatch:

jobs:
  build:
    runs-on: ubuntu-latest
    container: quay.io/pypa/manylinux_2_28_x86_64
    if: ${{ !contains(github.event.head_commit.message, '[skip ci]') }}

    steps:
    - name: Checkout code
      uses: actions/checkout@v4
      with:
        fetch-depth: 0

    - name: Print github refs
      run: |
        echo "github.ref_name: ${{ github.ref_name }}"
        echo "github.event.release.tag_name: ${{ github.event.release.tag_name }}"
        echo "github.ref: ${{ github.ref }}"

    - name: Checkout submodules
      run: |
        git config --global --add safe.directory /__w/samseg/samseg
        git submodule init
        git submodule update

    - name: Download gcc 10 compilers
      run: |
       yum install -y gcc-toolset-10
       source /opt/rh/gcc-toolset-10/enable
       gcc --version
       g++ --version

    - name: Install CMake 3.31.6 and wget
      run: |
        yum install -y wget
        wget https://github.com/Kitware/CMake/releases/download/v3.31.6/cmake-3.31.6-linux-x86_64.sh
        chmod +x cmake-3.31.6-linux-x86_64.sh
        ./cmake-3.31.6-linux-x86_64.sh --prefix=/usr/local --skip-license
        ln -s /usr/local/bin/cmake /usr/bin/cmake
        cmake --version

    - name: Build ITK
      run: |

        source /opt/rh/gcc-toolset-10/enable
        export CC=/opt/rh/gcc-toolset-10/root/usr/bin/gcc
        export CXX=/opt/rh/gcc-toolset-10/root/usr/bin/g++

        mkdir ITK-build
        cd ITK-build
        cmake \
            -DBUILD_SHARED_LIBS=OFF \
            -DBUILD_TESTING=OFF \
            -DBUILD_EXAMPLES=OFF \
            -DCMAKE_BUILD_TYPE=Release \
            -DCMAKE_INSTALL_PREFIX=../ITK-install \
            ../ITK
        make install
        cd ..

    - name: Build samseg and run tests
      run: |

        source /opt/rh/gcc-toolset-10/enable
        export CC=/opt/rh/gcc-toolset-10/root/usr/bin/gcc
        export CXX=/opt/rh/gcc-toolset-10/root/usr/bin/g++

        .github/workflows/linux_build.sh /opt/python/cp39-cp39/bin/python
        .github/workflows/linux_build.sh /opt/python/cp310-cp310/bin/python
        .github/workflows/linux_build.sh /opt/python/cp311-cp311/bin/python
        .github/workflows/linux_build.sh /opt/python/cp312-cp312/bin/python
        ls dist/*.whl | xargs -n1 auditwheel repair
      env:
        ITK_DIR: ITK-install

    - name: Upload artifact
      uses: actions/upload-artifact@v4
      with:
        name: linux-wheels
        path: wheelhouse/*.whl

    - name: Upload to PyPI
      if: startsWith(github.ref, 'refs/tags')
      run: |
        $PYTHON -m pip install twine
        $PYTHON -m twine upload wheelhouse/*.whl -u __token__ -p "$PASSWORD"
      env:
        PASSWORD: ${{ secrets.PYPI_TOKEN }}
        PYTHON: /opt/python/cp38-cp38/bin/python