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tests/anoph/test_pca.py
@@ -344,11 +344,16 @@ def test_pca_fit_exclude_samples(fixture, api: AnophelesPca):
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def test_pca_cohort_downsampling(fixture, api: AnophelesPca):
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# Parameters for selecting input data.
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all_sample_sets = api.sample_sets()["sample_set"].to_list()
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- sample_sets = np.random.sample(all_sample_sets, 2)
+ sample_sets = np.random.choice(all_sample_sets, size=2)
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data_params = dict(
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region=np.random.choice(api.contigs),
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sample_sets=sample_sets,
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- site_mask=np.random.choice((None,) + api.site_mask_ids),
+ site_mask=np.random.choice(
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+ [
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+ None,
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+ ]
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+ + api.site_mask_ids
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+ ),
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)
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# Test cohort downsampling.
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