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cleaned reference ovito
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journal-article.bib

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@@ -642,10 +642,10 @@ @software{lammps_code
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author = {Plimpton, Steven J. and Kohlmeyer, Axel and Thompson, Aidan P. and Moore, Stan G. and Berger, Richard},
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title = {{LAMMPS: Large-scale Atomic/Molecular Massively
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Parallel Simulator}},
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month = aug,
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year = 2024,
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month = {aug},
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year = {2024},
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publisher = {Zenodo},
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version = {stable\_XXAug2024},
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version = {stable\_29Aug2024},
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doi = {10.5281/zenodo.3726416},
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url = {https://doi.org/10.5281/zenodo.3726416}
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}
@@ -662,22 +662,15 @@ @misc{ovito_home
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note = {Accessed: 2024-07-15}
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}
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@article{ovito_paper,
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Author = {Stukowski, Alexander},
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Title = {{Visualization and analysis of atomistic simulation data with OVITO - the
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Open Visualization Tool}},
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Journal = {Modelling and Simulation in Materials Science and Engineering},
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Year = {{2010}},
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Volume = {{18}},
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Number = {{1}},
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pages = {015012},
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DOI = {{10.1088/0965-0393/18/1/015012}},
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Article-Number = {{015012}},
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ISSN = {{0965-0393}},
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EISSN = {{1361-651X}},
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ResearcherID-Numbers = {{Stukowski, Alexander/G-9695-2017}},
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ORCID-Numbers = {{Stukowski, Alexander/0000-0001-6750-3401}},
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Unique-ID = {{ISI:000272791800012}},
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@article{stukowski2009visualization,
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title={Visualization and analysis of atomistic simulation data with OVITO--the Open Visualization Tool},
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author={Stukowski, Alexander},
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journal={Modelling and simulation in materials science and engineering},
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volume={18},
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number={1},
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pages={015012},
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year={2009},
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publisher={IOP Publishing}
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}
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@misc{flatpak_home,

lammps-tutorials.tex

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@@ -375,7 +375,7 @@ \subsection{Software/system requirements}
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Pandas/Matplotlib~\cite{van1995python,hunter2007Matplotlib}, XmGrace,
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Gnuplot, Microsoft Excel, or LibreOffice Calc. For visualization,
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suitable tools include VMD~\cite{vmd_home,humphrey1996vmd} and
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OVITO~\cite{ovito_home,ovito_paper}.
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OVITO~\cite{ovito_home,stukowski2009visualization}.
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\subsection{About \lammpsgui{}}
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\label{tip-external-viz}
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Trajectories can be visualized using external tools such as VMD or
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OVITO~\cite{humphrey1996vmd, ovito_paper}. To do so, the IDs and
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OVITO~\cite{humphrey1996vmd, stukowski2009visualization}. To do so, the IDs and
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positions of the atoms must be regularly written to a file during the
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simulation. This can be accomplished by adding a \lmpcmd{dump} command
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to the input file. For instance, create a duplicate of

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