Merge pull request #30 from lammpstutorials/small-rewritting

Small cleanings of introduction and tutorial 1

Author: simongravelle

.gitignore

@@ -11,6 +11,7 @@ lammps-tutorials.suppinfo
 lammps-tutorials.fls
 lammps-tutorials.synctex*
 lammps-tutorials.fdb*
+pdflatex*.fls
 
 # LaTex files for the presubmission letter
 presubmission-letter/*.log
@@ -31,4 +32,5 @@ _region_.*
 
 # LAMMPS output files
 dump.*.jpg
-dump.*.ppn
+dump.*.ppm
+myimage-*.ppm

.gitmodules

@@ -1,5 +1,5 @@
 [submodule "files/pyplot-perso"]
-	path = files/pyplot-perso
+	path = files/shared-pyplot
 	url = git@github.com:simongravelle/pyplot-perso.git
 	branch = LAMMPS-livecom
 [submodule "dependencies/.github"]

figures/LJ-coords.png

@@ -0,0 +1,29 @@
+# LAMMPS Tutorial manifest file. This file determines what is downloaded when.
+# comments start with a # as the first character.
+# comments and empty lines are ignored
+##############################################################################
+# 1) input file templates
+# the first file will be automatically loaded
+initial.lmp
+improved.min.lmp
+improved.md.lmp
+
+# 2) solution files
+# only downloaded on request
+solution/initial.lmp
+solution/initial.log
+solution/initial.parta.dat
+solution/initial.partb.dat
+solution/initial.run0.png
+solution/initial.min.png
+solution/initial.mp4
+solution/improved.min.lmp
+solution/improved.min.log
+solution/improved.min.png
+solution/improved.md.lmp
+solution/improved.md.log
+solution/improved.md.dat
+solution/improved.md.png
+solution/min_coords.data
+
+# 3) folders not known to LAMMPS GUI will be skipped