@@ -324,7 +324,7 @@ \subsection{Background knowledge}
324324vi/vim, Emacs, Notepad, Gedit, and Visual Studio Code, can also be
325325used. LAMMPS can be executed either directly from
326326\lammpsgui {} (\hyperref [using-lammps-gui-label]{Appendix~\ref {using-lammps-gui-label }})
327- or from the command line (\hyperref [command-line-label]{Appendix~\ref {command-line-label }}),
327+ or from the command- line (\hyperref [command-line-label]{Appendix~\ref {command-line-label }}),
328328the latter of which requires some familiarity with executing commands
329329from a terminal or command-line prompt.
330330
@@ -352,7 +352,7 @@ \subsection{Software/system requirements}
352352(10 and 11) you can download a precompiled LAMMPS package from the
353353LAMMPS release page on GitHub~\cite {lammps_github_release }.
354354Select a package with `GUI' in the file name, which includes both,
355- \lammpsgui {} and a LAMMPS command line executable. These precompiled
355+ \lammpsgui {} and a LAMMPS command- line executable. These precompiled
356356packages are designed to be portable, and therefore omit support for
357357parallel execution with MPI. Instructions for installing \lammpsgui {}
358358and using its most relevant features for the tutorials are provided in
@@ -375,11 +375,6 @@ \subsection{Software/system requirements}
375375suitable external tools include VMD~\cite {vmd_home ,humphrey1996vmd }
376376and OVITO~\cite {ovito_home ,ovito_paper }.
377377
378- % \hyperref[command-line-label]{Appendix~\ref{command-line-label}} has instructions
379- % for running LAMMPS from the command line.
380- % SG: I placed a reference of Appendix B before, so I dont think that sentence is
381- % necessary here.
382-
383378\subsection {About \lammpsgui {} }
384379
385380\lammpsgui {} is a graphical text editor, enhanced for editing LAMMPS input
@@ -848,7 +843,7 @@ \subsubsection{My first input}
848843create snapshot images during the simulation. We have already explored
849844the \guicmd {Image Viewer} window. Open it again and adjust the
850845visualization to your liking using the available buttons. Now you can
851- copy the command line used to create this visualization to the clipboard
846+ copy the commands used to create this visualization to the clipboard
852847by either using the \guicmd {Ctrl-D} keyboard shortcut or selecting
853848\guicmd {Copy dump image command} from the \guicmd {File} menu. This text
854849can be pasted into the into the \lmpcmd {Visualization} section of
@@ -4346,7 +4341,7 @@ \subsubsection{Installing the Linux Flatpak Bundle}
43464341registered to launch \lammpsgui {} when opening a file with this
43474342extension in the desktop's file manager.
43484343
4349- You can also launch \lammpsgui {} from the command line using the following command:
4344+ You can also launch \lammpsgui {} from the command- line using the following command:
43504345\ begin{lstlisting} [language=tcl]
43514346flatpak run org.lammps.lammps-gui
43524347\end {lstlisting }
@@ -4386,11 +4381,11 @@ \subsubsection{Installing the Windows package}
43864381Additionally, the `` .lmp'' file extension should be registered with
43874382Windows File Explorer to open \lammpsgui {} when opening a file with the
43884383`` .lmp`` extension. The `` lammps-gui'' and `` lmp'' commands should also
4389- be available in the command line.
4384+ be available in the command- line.
43904385
43914386\subsection {Opening, Editing, and Saving Files }
43924387
4393- \lammpsgui {} can be launched from the command line, as explained above, where you
4388+ \lammpsgui {} can be launched from the command- line, as explained above, where you
43944389can either launch it without arguments or provide one file name as an argument. All
43954390other arguments will be ignored. For example:
43964391\ begin{lstlisting} [language=tcl]
@@ -4415,7 +4410,7 @@ \subsection{Opening, Editing, and Saving Files}
44154410keywords or when a filename is expected, in which case,
44164411the pop-up will list files in the current folder.
44174412
4418- As soon as \lammpsgui {} recognizes a command line , it applies syntax
4413+ As soon as \lammpsgui {} recognizes a command, it applies syntax
44194414highlighting according to built-in categories. This can help
44204415detect typos, since those may cause \lammpsgui {} not to
44214416recognize the syntax and thus not apply or partially apply
@@ -4515,21 +4510,20 @@ \subsection{Preferences}
45154510\end {itemize }
45164511See Ref.\, \citenum {lammps_gui_docs} for a full list of options.
45174512
4518- \section {Running LAMMPS on the Command Line without the GUI }
4513+ \section {Running LAMMPS on the Command- Line without the GUI }
45194514\label {command-line-label }
45204515
4521- LAMMPS can also be executed from the command line on Linux, macOS, and
4516+ LAMMPS can also be executed from the command- line on Linux, macOS, and
45224517Windows without using the GUI. This is the more common way to run LAMMPS.
4523- Both, the \lammpsgui {} program and the LAMMPS command line executable
4524- utilize the same LAMMPS library and thus no changes to the input file should
4525- be required.
4518+ Both, the \lammpsgui {} program and the LAMMPS command-line executable
4519+ utilize the same LAMMPS library and thus no changes to the input file are required.
45264520
4527- First open a terminal or command line prompt window and navigate to the
4528- directory containing the \flecmd {input.lmp} file. Then execute:
4521+ First, open a terminal or command- line prompt window and navigate to the
4522+ directory containing the \flecmd {input.lmp} file. Then execute:
45294523\ begin{lstlisting} [language=tcl]
45304524lmp -in input.lmp
45314525\end {lstlisting }
4532- where \flecmd {lmp} is the command line LAMMPS command.
4526+ where \flecmd {lmp} is the command- line LAMMPS command.
45334527
45344528For parallel execution with 4 processors (via OpenMP threads where supported
45354529by the OPENMP package), use:
@@ -4538,11 +4532,11 @@ \section{Running LAMMPS on the Command Line without the GUI}
45384532\end {lstlisting }
45394533
45404534\begin {note }
4541- Running in parallel via MPI requires a correspondingly compiled LAMMPS
4542- package and is not compatible with the GUI. On supercomputers or HPC
4543- clusters, pre-compiled LAMMPS executables are often provided by the
4544- user support staff . Please consult the corresponding documentation of
4545- the facility or contact its user support for more information .
4535+ Running in parallel via MPI requires a specially compiled LAMMPS
4536+ package and is not supported by the GUI. On supercomputers or HPC
4537+ clusters, pre-compiled LAMMPS executables are typically provided
4538+ by the facility's user support team . For more information, please
4539+ refer to the facility's documentation or contact its user support staff .
45464540\end {note }
45474541
45484542See Ref.\, \citenum {lammps_run_docs} for a complete description on how to
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