@@ -414,16 +414,16 @@ \subsection{About LAMMPS--GUI}
414414
415415\section {Content and links }
416416
417- % AK: S.G. this refers to the "old" tutorials.
418417The tutorials described in this article can be accessed at
419418\href {https://lammpstutorials.github.io}{lammpstutorials.github.io},
420419where additional exercises with solutions are also provided. All files
421420and inputs required to follow the tutorials are available from a
422421dedicated GitHub account,
423- \href {https://github.com/lammpstutorials}{github.com/lammpstutorials}. In
424- the following, all LAMMPS input file commands or commands for the
425- console are typeset in \lmpcmd {bold monospace} and file and folder names
426- are typeset in \textit {italic }.
422+ \href {https://github.com/lammpstutorials}{github.com/lammpstutorials}.
423+
424+ In the following, all LAMMPS input or console commands are typeset in
425+ \lmpcmd {bold monospace}, section, file and folder names are typeset in
426+ \textit {italic }, and keyboard shortcuts in \texttt {monospace }.
427427
428428\subsection {Tutorial 1: Lennard-Jones fluid }
429429\label {lennard-jones-label }
@@ -447,7 +447,7 @@ \subsubsection{My first input}
447447follow the instructions. This will select, and -- if needed -- create,
448448a folder, place the initial input file \textit {initial.lmp } into it, and
449449open that file in the LAMMPS--GUI editor. The editor should have the
450- following content afterwards.
450+ following content:
451451\ begin{lstlisting}
452452# PART A - ENERGY MINIMIZATION
453453# 1) Initialization
@@ -463,7 +463,7 @@ \subsubsection{My first input}
463463necessarily need to be in that exact order. For instance, parts 3 and 4
464464could be inverted, or part 4 could be omitted. Note, however, that
465465LAMMPS reads input files from top to bottom and processes each command
466- in it \emph {immediately }. Therefore, the \textit {Initialization } and
466+ \emph {immediately }. Therefore, the \textit {Initialization } and
467467\textit {System definition } categories must appear at the top of the
468468input, and the \textit {Run } category at the bottom. Also, the specifics
469469of some commands can change after global settings are changed, so the
@@ -476,12 +476,11 @@ \subsubsection{My first input}
476476behavior at the boundaries of the box (e.g., periodic or non-periodic)
477477or the type of atoms (e.g., uncharged point particles or extended
478478spheres with a radius and angular velocities). These commands must be
479- executed \emph {before } the simulation box is created, and they will
480- cause an error if entered later. Similarly, many LAMMPS commands may
481- only be entered \emph {after } the simulation box is defined. Only a very
482- small number of commands may be used in both cases. Edit
483- \textit {initial.lmp } so that the \textit {Initialization } section looks
484- like this:
479+ executed \emph {before } the simulation box is created; they will cause an
480+ error if entered later. Similarly, many LAMMPS commands may only be
481+ entered \emph {after } the simulation box is defined. Only a very small
482+ number of commands may be used in both cases. Edit \textit {initial.lmp }
483+ so that the \textit {Initialization } section looks like this:
485484
486485\ begin{lstlisting}
487486# 1) Initialization
@@ -515,15 +514,14 @@ \subsubsection{My first input}
515514different choice for each side, so something like \lmpcmd {boundary p p
516515 fm} is valid input and suitable for slab geometry systems.
517516
518- Strictly speaking, neither of these three commands are required, because
519- all three settings are the default settings for the respective global
520- properties. It is, however, good practice to make such defaults
521- explicit so that there is no confusion when sharing the input with other
522- LAMMPS users.
517+ Strictly speaking, neither of these four commands are required, because
518+ the represent they default settings for the respective global properties.
519+ It is, however, good practice to make such defaults explicit so that
520+ there is no confusion when sharing inputs with other LAMMPS users.
523521
524522\begin {figure }
525523\centering
526- \includegraphics [width=0.75 \linewidth ]{GUI-1.png}
524+ \includegraphics [width=0.65 \linewidth ]{GUI-1.png}
527525\caption {A screenshot of the LAMMPS-GUI \textit {Editor } window during
528526 \hyperref [lennard-jones-label]{Tutorial 1}. The coloring of the text
529527 is based on the syntax for LAMMPS input files. The pop-up menu is the
@@ -536,7 +534,7 @@ \subsubsection{My first input}
536534editor buffer, the LAMMPS documentation can be accessed by
537535right-clicking the line with a command, such as \lmpcmd {units lj}, and
538536selecting \textit {View documentation for (\dots ) }\, . LAMMPS--GUI will
539- ask your web browser to open the corresponding URL in the online manual.
537+ ask your web browser to open the corresponding URL of the online manual.
540538See figure \ref {fig:GUI-1 } for a screenshot with such a context menu.
541539
542540\paragraph {System definition }
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