@@ -350,7 +350,7 @@ \subsection{Background knowledge}
350350\cite {barrat2003basic }, as well as \textit {Theory of Simple Liquids:
351351 with Applications to Soft Matter } by Jean-Pierre Hansen and Ian Ranald
352352McDonald~\cite {hansen2013theory }. For more resources, the SklogWiki
353- platform provies a wide range of information on statistical mechanics
353+ platform provides a wide range of information on statistical mechanics
354354and molecular simulations~\cite {sklogwiki_main_page }.
355355
356356\subsection {Software/system requirements }
@@ -359,11 +359,11 @@ \subsection{Software/system requirements}
359359and the matching \lammpsgui {} software {\color {blue}version 1.7.0} are required to
360360follow the tutorials, as they include features that were first
361361introduced in these versions. For Linux (x86\_ 64 CPU), macOS (BigSur or
362- later), and Windows (10 and 11) you can download a precompiled LAMMPS
362+ later), and Windows (10 and 11) you can download a pre-compiled LAMMPS
363363package from the LAMMPS release page on
364364GitHub~\cite {lammps_github_release }. Select a package with `GUI' in the
365365file name, which includes both, \lammpsgui {} and the LAMMPS command-line
366- executable. These precompiled packages are designed to be portable, and
366+ executable. These pre-compiled packages are designed to be portable, and
367367therefore omit support for parallel execution with MPI. Instructions
368368for installing \lammpsgui {} and using its most relevant features for the
369369tutorials are provided in
@@ -450,7 +450,7 @@ \subsection{Tutorial 1: Lennard-Jones fluid}
450450\includegraphics [width=0.65\linewidth ]{LJ-avatar}
451451\caption {The binary mixture simulated in
452452 \hyperref [lennard-jones-label]{Tutorial 1}, with the atoms of type 1
453- represented as small green spheres and lge atoms of type 2 as large
453+ represented as small green spheres and the atoms of type 2 as large
454454 blue spheres.}
455455\label {fig:LJ-avatar }
456456\end {figure }
@@ -1160,8 +1160,8 @@ \subsubsection{Improving the script}
11601160compute sumcoor12 grp_t1 reduce ave c_coor12
11611161\end {lstlisting }
11621162The \lmpcmd {compute reduce ave} command is used to average the per-atom
1163- coordination number calculated by the \lmpcmd {coord/atom}
1164- compute command. {\color {blue}Compute commands do not print or output
1163+ coordination number calculated by the \lmpcmd {compute coord/atom}
1164+ command. {\color {blue}Compute commands do not print or output
11651165anything by themselves, nor are they automatically executed;} they
11661166require a `` consumer'' command that references the compute. In this case, the
11671167first compute is referenced by the second, and we reference the second
@@ -1435,9 +1435,9 @@ \subsubsection{Unbreakable bonds}
14351435\begin {note }
14361436{\color {blue}
14371437Bonds, angles, dihedrals, and impropers in LAMMPS are assigned types and IDs, just like atoms.
1438- The ID uniquely identifies each instance, while the type determines which parameters
1438+ The ID uniquely identifies each interaction instance, while the type determines which parameters
14391439(from the \lmpcmd {bond\_ coeff}, \lmpcmd {angle\_ coeff}, etc. commands) are applied.
1440- In this tutorial, these types and IDs are specified in the \lmpcmd {.data} file
1440+ In this tutorial, these types and IDs are specified in the \lmpcmd {.data} file and
14411441read by the \lmpcmd {read\_ data} command.}
14421442\end {note }
14431443
@@ -1487,8 +1487,8 @@ \subsubsection{Unbreakable bonds}
14871487incorporate it using the \lmpcmd {include} command. Using \lmpcmd {include} allows
14881488us to conveniently reuse the parameter settings
14891489in other inputs or switch them with others. This will become more general
1490- when using type labels, which is shown in the next
1491- tutorial~ \cite { gissinger2024type } .
1490+ when using type labels~ \cite { gissinger2024type } , which is shown in the next
1491+ tutorial.
14921492\end {note }
14931493
14941494\paragraph {Prepare the initial state }
@@ -4699,7 +4699,7 @@ \subsubsection{Simulating the reaction}
46994699% of it may be redundant with the note, but I would still leave it as the reader
47004700% will have the full information.
47014701With the \lmpcmd {stabilization} keyword, the \lmpcmd {fix bond/react} command will
4702- stabilize the atoms involved in the reaction using the \lmpcmd {nve/limit}
4702+ stabilize the atoms involved in the reaction using the \lmpcmd {fix nve/limit}
47034703command with a maximum displacement of $ 0.03 \, \mathrm {\AA {}}$ .
47044704{\color {blue}The \lmpcmd {fix nve/limit} command functions similar to
47054705\lmpcmd {fix nve}, but restricts how far atoms can move in a single time step, even with
@@ -4807,7 +4807,7 @@ \section{Using \lammpsgui{}}
48074807
48084808\subsection {Installation }
48094809
4810- Precompiled versions of \lammpsgui {} are available for Linux, {macOS},
4810+ Pre-compiled versions of \lammpsgui {} are available for Linux, {macOS},
48114811and Windows on the LAMMPS GitHub Release
48124812page~\cite {lammps_github_release }. The Linux version is provided in two
48134813formats: as compressed tar archive (.tar.gz) and as a Flatpak
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