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leehartleehart
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Rename to _validate_sample_selection_params, update uses
1 parent ede3ae6 commit 165fc40

6 files changed

Lines changed: 13 additions & 13 deletions

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‎malariagen_data/anoph/base_params.py‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -106,7 +106,7 @@
106106
]
107107

108108

109-
def validate_sample_selection_params(
109+
def _validate_sample_selection_params(
110110
*,
111111
sample_query: Optional[sample_query],
112112
sample_indices: Optional[sample_indices],

‎malariagen_data/anoph/distance.py‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -116,7 +116,7 @@ def biallelic_diplotype_pairwise_distances(
116116
name = "biallelic_diplotype_pairwise_distances"
117117

118118
# Check that either sample_query xor sample_indices are provided.
119-
base_params.validate_sample_selection_params(
119+
base_params._validate_sample_selection_params(
120120
sample_query=sample_query, sample_indices=sample_indices
121121
)
122122

@@ -278,7 +278,7 @@ def njt(
278278
name = "njt_v1"
279279

280280
# Check that either sample_query xor sample_indices are provided.
281-
base_params.validate_sample_selection_params(
281+
base_params._validate_sample_selection_params(
282282
sample_query=sample_query, sample_indices=sample_indices
283283
)
284284

@@ -469,7 +469,7 @@ def plot_njt(
469469
chunks: base_params.chunks = base_params.native_chunks,
470470
) -> plotly_params.figure:
471471
# Check that either sample_query xor sample_indices are provided.
472-
base_params.validate_sample_selection_params(
472+
base_params._validate_sample_selection_params(
473473
sample_query=sample_query, sample_indices=sample_indices
474474
)
475475

‎malariagen_data/anoph/pca.py‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -83,7 +83,7 @@ def pca(
8383
name = "pca_v5"
8484

8585
# Check that either sample_query xor sample_indices are provided.
86-
base_params.validate_sample_selection_params(
86+
base_params._validate_sample_selection_params(
8787
sample_query=sample_query, sample_indices=sample_indices
8888
)
8989

‎malariagen_data/anoph/sample_metadata.py‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -708,7 +708,7 @@ def sample_metadata(
708708
sample_indices: Optional[base_params.sample_indices] = None,
709709
) -> pd.DataFrame:
710710
# Check that either sample_query xor sample_indices are provided.
711-
base_params.validate_sample_selection_params(
711+
base_params._validate_sample_selection_params(
712712
sample_query=sample_query, sample_indices=sample_indices
713713
)
714714

@@ -1061,7 +1061,7 @@ def _prep_sample_selection_cache_params(
10611061
sample_indices: Optional[base_params.sample_indices],
10621062
) -> Tuple[List[str], Optional[List[int]]]:
10631063
# Check that either sample_query xor sample_indices are provided.
1064-
base_params.validate_sample_selection_params(
1064+
base_params._validate_sample_selection_params(
10651065
sample_query=sample_query, sample_indices=sample_indices
10661066
)
10671067

‎malariagen_data/anoph/snp_data.py‎

Lines changed: 5 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -457,7 +457,7 @@ def snp_genotypes(
457457
chunks: base_params.chunks = base_params.native_chunks,
458458
) -> da.Array:
459459
# Check that either sample_query xor sample_indices are provided.
460-
base_params.validate_sample_selection_params(
460+
base_params._validate_sample_selection_params(
461461
sample_query=sample_query, sample_indices=sample_indices
462462
)
463463

@@ -1035,7 +1035,7 @@ def snp_calls(
10351035
random_seed: base_params.random_seed = 42,
10361036
) -> xr.Dataset:
10371037
# Check that either sample_query xor sample_indices are provided.
1038-
base_params.validate_sample_selection_params(
1038+
base_params._validate_sample_selection_params(
10391039
sample_query=sample_query, sample_indices=sample_indices
10401040
)
10411041

@@ -1369,7 +1369,7 @@ def snp_allele_counts(
13691369
name = "snp_allele_counts_v2"
13701370

13711371
# Check that either sample_query xor sample_indices are provided.
1372-
base_params.validate_sample_selection_params(
1372+
base_params._validate_sample_selection_params(
13731373
sample_query=sample_query, sample_indices=sample_indices
13741374
)
13751375

@@ -1760,7 +1760,7 @@ def biallelic_snp_calls(
17601760
thin_offset: base_params.thin_offset = 0,
17611761
) -> xr.Dataset:
17621762
# Check that either sample_query xor sample_indices are provided.
1763-
base_params.validate_sample_selection_params(
1763+
base_params._validate_sample_selection_params(
17641764
sample_query=sample_query, sample_indices=sample_indices
17651765
)
17661766

@@ -1926,7 +1926,7 @@ def biallelic_diplotypes(
19261926
name = "biallelic_diplotypes"
19271927

19281928
# Check that either sample_query xor sample_indices are provided.
1929-
base_params.validate_sample_selection_params(
1929+
base_params._validate_sample_selection_params(
19301930
sample_query=sample_query, sample_indices=sample_indices
19311931
)
19321932

‎malariagen_data/anoph/to_plink.py‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -71,7 +71,7 @@ def biallelic_snps_to_plink(
7171
chunks: base_params.chunks = base_params.native_chunks,
7272
):
7373
# Check that either sample_query xor sample_indices are provided.
74-
base_params.validate_sample_selection_params(
74+
base_params._validate_sample_selection_params(
7575
sample_query=sample_query, sample_indices=sample_indices
7676
)
7777

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