Try to avoid CI segfault by using python engine for Pandas read_csv

leehart · leehart · commit 50e5f19ae257 · 2025-12-04T12:05:50.000Z
diff --git a/malariagen_data/util.py b/malariagen_data/util.py
@@ -83,6 +83,7 @@ def _read_gff3(buf, compression="gzip"):
         names=gff3_cols,
         na_values=["", "."],
         compression=compression,
+        engine="python",
     )
 
     # parse attributes

Original file line number	Diff line number	Diff line change
`@@ -83,6 +83,7 @@ def _read_gff3(buf, compression="gzip"):`
`83`	`83`	`names=gff3_cols,`
`84`	`84`	`na_values=["", "."],`
`85`	`85`	`compression=compression,`
	`86`	`+ engine="python",`
`86`	`87`	`)`
`87`	`88`
`88`	`89`	`# parse attributes`