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Remove default taxon_by from prep_samples_for_cohort_grouping()
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Lines changed: 1 addition & 3 deletions

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malariagen_data/util.py

Lines changed: 1 addition & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1612,9 +1612,7 @@ def _karyotype_tags_n_alt(gt, alts, inversion_alts):
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return inv_n_alt
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def prep_samples_for_cohort_grouping(
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*, df_samples, area_by, period_by, taxon_by="taxon"
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):
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def prep_samples_for_cohort_grouping(*, df_samples, area_by, period_by, taxon_by):
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# Take a copy, as we will modify the dataframe.
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df_samples = df_samples.copy()
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