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add surveillance/restricted use flags
1 parent b76f818 commit 5956494

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malariagen_data/adir1.py

Lines changed: 22 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -86,6 +86,8 @@ def __init__(
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discordant_read_calls_analysis=None,
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pre=False,
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tqdm_class=None,
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unrestricted_use_only=False,
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surveillance_use_only=False,
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**storage_options, # used by fsspec via init_filesystem()
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):
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super().__init__(
@@ -122,6 +124,8 @@ def __init__(
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virtual_contigs=None,
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gene_names=None,
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inversion_tag_path=None,
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unrestricted_use_only=unrestricted_use_only,
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surveillance_use_only=surveillance_use_only,
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)
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def __repr__(self):
@@ -199,6 +203,24 @@ def _repr_html_(self):
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</th>
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<td>{self.client_location}</td>
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</tr>
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<tr>
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<th style="text-align: left">
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Data filtered for unrestricted use only
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</th>
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<td>{self._unrestricted_use_only}</td>
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</tr>
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<tr>
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<th style="text-align: left">
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Data filtered for surveillance use only
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</th>
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<td>{self._surveillance_use_only}</td>
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</tr>
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<tr>
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<th style="text-align: left">
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Relevant data releases
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</th>
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<td>{', '.join(self.releases)}</td>
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</tr>
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</tbody>
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</table>
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"""

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