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skip tests for adir1 that have sex call query
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Lines changed: 8 additions & 3 deletions

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tests/anoph/test_snp_data.py

Lines changed: 8 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -9,7 +9,9 @@
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import xarray as xr
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import zarr # type: ignore
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from numpy.testing import assert_array_equal
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from pytest_cases import parametrize_with_cases
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from pytest_cases import parametrize_with_cases, case
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from pytest_cases import filters as ft
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from malariagen_data import af1 as _af1
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from malariagen_data import ag3 as _ag3
@@ -91,14 +93,17 @@ def adir1_sim_api(adir1_sim_fixture):
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# pytest alone.
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@case(tags="ag3")
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def case_ag3_sim(ag3_sim_fixture, ag3_sim_api):
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return ag3_sim_fixture, ag3_sim_api
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@case(tags="af1")
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def case_af1_sim(af1_sim_fixture, af1_sim_api):
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return af1_sim_fixture, af1_sim_api
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@case(tags="adir1")
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def case_adir1_sim(adir1_sim_fixture, adir1_sim_api):
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return adir1_sim_fixture, adir1_sim_api
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@@ -1076,7 +1081,7 @@ def test_snp_allele_counts_with_site_mask_param(fixture, api: AnophelesSnpData):
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)
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@parametrize_with_cases("fixture,api", cases=".")
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@parametrize_with_cases("fixture,api", cases=".", filter=~ft.has_tag("adir1"))
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def test_snp_allele_counts_with_sample_query_param(fixture, api: AnophelesSnpData):
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# Fixed parameters.
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all_sample_sets = api.sample_sets()["sample_set"].to_list()
@@ -1098,7 +1103,7 @@ def test_snp_allele_counts_with_sample_query_param(fixture, api: AnophelesSnpDat
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)
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@parametrize_with_cases("fixture,api", cases=".")
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@parametrize_with_cases("fixture,api", cases=".", filter=~ft.has_tag("adir1"))
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def test_snp_allele_counts_with_sample_query_options_param(
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fixture, api: AnophelesSnpData
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):

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