Ignore type check for untyped array comparison in test_snp_frq.py. Rename repeated expected_alleles var.

Author: leehart

tests/anoph/test_snp_frq.py

@@ -156,10 +156,10 @@ def test_snp_effects(fixture, api: AnophelesSnpFrequencyAnalysis):
     position = df["position"].values
     assert np.all(position >= transcript["start"])
     assert np.all(position <= transcript["end"])
-    assert np.all(position[1:] >= position[:-1])
-    expected_alleles = list("ACGT")
-    assert np.all(df["ref_allele"].isin(expected_alleles))
-    assert np.all(df["alt_allele"].isin(expected_alleles))
+    assert np.all(position[1:] >= position[:-1])  # type: ignore
+    test_expected_alleles = list("ACGT")
+    assert np.all(df["ref_allele"].isin(test_expected_alleles))
+    assert np.all(df["alt_allele"].isin(test_expected_alleles))
     assert np.all(df["transcript"] == transcript.name)
     assert np.all(df["effect"].isin(expected_effects))
     assert np.all(df["impact"].isin(expected_impacts))