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Expand file tree Collapse file tree Original file line number Diff line number Diff line change 33import dask
44import pandas as pd # type: ignore
55import plotly .express as px # type: ignore
6-
76import malariagen_data
87from .anopheles import AnophelesDataResource
8+ from .anoph .phenotypes import PhenotypeDataMixin
99
1010
1111# silence dask performance warnings
@@ -78,7 +78,7 @@ def _setup_aim_palettes():
7878}
7979
8080
81- class Ag3 (AnophelesDataResource ):
81+ class Ag3 (AnophelesDataResource , PhenotypeDataMixin ):
8282 """Provides access to data from Ag3.x releases.
8383
8484 Parameters
@@ -135,6 +135,7 @@ class Ag3(AnophelesDataResource):
135135
136136 _xpehh_gwss_cache_name = XPEHH_GWSS_CACHE_NAME
137137 _ihs_gwss_cache_name = IHS_GWSS_CACHE_NAME
138+ _phenotype_gcs_path_template = "gs://vo_agam_release_master_us_central1/v3.2/phenotypes/all/{sample_set}/phenotypes.csv"
138139
139140 def __init__ (
140141 self ,
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