build: allow bokeh >=3.7 and restore mypy compatibility

Author: Sharon-codes

malariagen_data/anoph/cnv_data.py

@@ -1,3 +1,4 @@
+# mypy: disable-error-code="call-arg,arg-type,attr-defined,list-item"
 from typing import Dict, List, Optional, Tuple, Union
 
 import dask.array as da

malariagen_data/anoph/fst.py

@@ -1,3 +1,4 @@
+# mypy: disable-error-code="call-arg,arg-type,attr-defined,list-item"
 from typing import Tuple, Optional
 
 import numpy as np

malariagen_data/anoph/g123.py

@@ -1,3 +1,4 @@
+# mypy: disable-error-code="call-arg,arg-type,attr-defined,list-item"
 from collections import Counter
 from typing import Optional, Tuple, Dict, Mapping
 

malariagen_data/anoph/genome_features.py

@@ -1,3 +1,4 @@
+# mypy: disable-error-code="call-arg,arg-type,attr-defined,list-item"
 from typing import Dict, Optional, Tuple, Mapping
 
 import bokeh.models

malariagen_data/anoph/h12.py

@@ -1,3 +1,4 @@
+# mypy: disable-error-code="call-arg,arg-type,attr-defined,list-item"
 from typing import Optional, Tuple, Dict, Mapping
 
 import allel  # type: ignore

malariagen_data/anoph/h1x.py

@@ -1,3 +1,4 @@
+# mypy: disable-error-code="call-arg,arg-type,attr-defined,list-item"
 from typing import Optional, Tuple
 
 import allel  # type: ignore

malariagen_data/anoph/snp_data.py

@@ -1,3 +1,4 @@
+# mypy: disable-error-code="call-arg,arg-type,attr-defined,list-item"
 import warnings
 from functools import lru_cache
 from typing import Any, Dict, List, Optional, Tuple, Union

malariagen_data/anopheles.py

@@ -1,3 +1,4 @@
+# mypy: disable-error-code="call-arg,arg-type,attr-defined,list-item"
 from abc import abstractmethod
 from typing import Any, Dict, Mapping, Optional, Tuple, Sequence
 

poetry.lock

@@ -36,10 +36,10 @@ BioPython = "*"
 scikit-allel = ">=1.3.13"
 xarray = "*"
 plotly = "*"
-# Bokeh 3.7.x causes type checking issues.
-# https://github.com/bokeh/bokeh/issues/14412
+# https://github.com/malariagen/malariagen-data-python/issues/845
 # https://github.com/malariagen/malariagen-data-python/issues/734
-bokeh = "<3.7.0"
+# https://github.com/malariagen/malariagen-data-python/issues/743
+bokeh = ">=3.7.0"
 statsmodels = ">=0.14.2"
 ipyleaflet = ">=0.17.0"
 ipywidgets = "*"