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test(cnv): assert contig alias matches contigs output
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Lines changed: 3 additions & 2 deletions

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tests/anoph/test_cnv_data.py

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -651,9 +651,10 @@ def test_cnv_discordant_read_calls_deprecated_contig_alias(
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):
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sample_set = random.choice(api.sample_sets()["sample_set"].to_list())
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contig = random.choice(api.contigs)
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ds_contigs = api.cnv_discordant_read_calls(contigs=contig, sample_sets=sample_set)
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with pytest.warns(DeprecationWarning, match="deprecated"):
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ds = api.cnv_discordant_read_calls(contig=contig, sample_sets=sample_set)
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assert isinstance(ds, xr.Dataset)
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ds_contig = api.cnv_discordant_read_calls(contig=contig, sample_sets=sample_set)
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xr.testing.assert_identical(ds_contig, ds_contigs)
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def test_cnv_discordant_read_calls__sample_query(

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