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Expand file tree Collapse file tree Original file line number Diff line number Diff line change 22import pytest
33
44from malariagen_data import Amin1 , Region
5- from malariagen_data .util import locate_region , resolve_region
5+ from malariagen_data .util import _locate_region , _resolve_region
66
77
88def setup_amin1 (url = "simplecache::gs://vo_amin_release_master_us_central1/" , ** kwargs ):
@@ -40,10 +40,10 @@ def test_locate_region(region_raw):
4040 # TODO Migrate this test.
4141 amin1 = setup_amin1 ()
4242 gene_annotation = amin1 .geneset (attributes = ["ID" ])
43- region = resolve_region (amin1 , region_raw )
43+ region = _resolve_region (amin1 , region_raw )
4444 pos = amin1 .snp_sites (region = region .contig , field = "POS" )
4545 ref = amin1 .snp_sites (region = region .contig , field = "REF" )
46- loc_region = locate_region (region , pos )
46+ loc_region = _locate_region (region , pos )
4747
4848 # check types
4949 assert isinstance (loc_region , slice )
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