Merge branch 'master' into GH391_add_params_to_allele_frequencies_advanced

Author: leehart

malariagen_data/ag3.py

@@ -3,11 +3,9 @@
 import dask
 import pandas as pd  # type: ignore
 import plotly.express as px  # type: ignore
-
 import malariagen_data
 from .anopheles import AnophelesDataResource
 
-
 # silence dask performance warnings
 dask.config.set(**{"array.slicing.split_native_chunks": False})  # type: ignore
 

malariagen_data/anoph/phenotype_params.py

@@ -0,0 +1,19 @@
+from typing import TypeAlias, Optional, Union, List, Annotated
+
+# Type alias for insecticide parameter
+insecticide: TypeAlias = Annotated[
+    Optional[Union[str, List[str]]],
+    "Insecticide name(s) to filter by. Can be a single insecticide name or a list of names.",
+]
+
+# Type alias for dose parameter
+dose: TypeAlias = Annotated[
+    Optional[Union[float, List[float]]],
+    "Insecticide dose(s) to filter by. Can be a single dose value or a list of dose values.",
+]
+
+# Type alias for phenotype parameter
+phenotype: TypeAlias = Annotated[
+    Optional[Union[str, List[str]]],
+    "Phenotype outcome(s) to filter by. Can be a single phenotype value (e.g., 'alive', 'dead') or a list of values.",
+]