Merge branch 'master' into 583-GWSS-colors

Author: jonbrenas

docs/source/Ag3.rst

@@ -49,6 +49,7 @@ Sample metadata access
     sample_metadata
     add_extra_metadata
     clear_extra_metadata
+    cross_metadata
     count_samples
     lookup_sample
     plot_samples_bar

docs/source/conf.py

@@ -12,7 +12,7 @@
 # https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
 
 project = "malariagen_data API"
-copyright = "2023, MalariaGEN"
+copyright = "2024, MalariaGEN"
 author = "MalariaGEN"
 version = os.environ.get("VERSION_TAG", "dev")
 

malariagen_data/anoph/g123.py

@@ -80,7 +80,7 @@ def _load_data_for_g123(
                     inline_array=True,
                     chunks="native",
                 ).compute()
-                hap_site_mask = np.in1d(pos, haplotype_pos, assume_unique=True)
+                hap_site_mask = np.isin(pos, haplotype_pos, assume_unique=True)
                 pos = pos[hap_site_mask]
                 gt = gt.compress(hap_site_mask, axis=0)