Merge branch 'master' into add_pf9

jonbrenas · web-flow · commit f6ea82426b83 · 2026-04-01T11:39:35.000+01:00
diff --git a/malariagen_data/pf8_config.json b/malariagen_data/pf8_config.json
@@ -1,5 +1,5 @@
 {
-    "default_url": "s3://pf8-release/" ,
+    "default_url": "gs://pf8-release/" ,
     "metadata_path": "metadata/Pf8_samples.txt",
     "reference_path": "reference/PlasmoDB-54-Pfalciparum3D7-Genome.zarr/",
     "reference_contigs": [
diff --git a/tests/integration/test_pf8.py b/tests/integration/test_pf8.py
@@ -16,7 +16,6 @@ def setup_pf8(url="simplecache::gs://pf8-release/", **storage_kwargs):
 @pytest.mark.parametrize(
     "url",
     [
-        "s3://pf8-release/",
         "gs://pf8-release/",
         "gcs://pf8-release/",
         "gs://pf8-release",

Original file line number	Diff line number	Diff line change
`@@ -1,5 +1,5 @@`
`1`	`1`	`{`
`2`		`- "default_url": "s3://pf8-release/" ,`
	`2`	`+ "default_url": "gs://pf8-release/" ,`
`3`	`3`	`"metadata_path": "metadata/Pf8_samples.txt",`
`4`	`4`	`"reference_path": "reference/PlasmoDB-54-Pfalciparum3D7-Genome.zarr/",`
`5`	`5`	`"reference_contigs": [`
Original file line number	Diff line number	Diff line change
`@@ -16,7 +16,6 @@ def setup_pf8(url="simplecache::gs://pf8-release/", **storage_kwargs):`
`16`	`16`	`@pytest.mark.parametrize(`
`17`	`17`	`"url",`
`18`	`18`	`[`
`19`		`- "s3://pf8-release/",`
`20`	`19`	`"gs://pf8-release/",`
`21`	`20`	`"gcs://pf8-release/",`
`22`	`21`	`"gs://pf8-release",`