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Update tests/test_veff.py
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
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tests/test_veff.py

Lines changed: 5 additions & 4 deletions
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@@ -564,10 +564,11 @@ def test_stop_lost_no_scores(self):
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class TestSynonymousStart:
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"""
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The SYNONYMOUS_START branch (veff.py L334-337) requires ref_cds_start==0
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and ref_aa==alt_aa. No SNP on ATG produces a synonymous Met under the
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standard NCBI codon table, so this branch is unreachable in practice.
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A test should be added here if non-standard codon tables are ever supported.
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The SYNONYMOUS_START branch in `_get_within_cds_effect` requires
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ref_cds_start == 0 and ref_aa == alt_aa. No SNP on ATG produces a
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synonymous Met under the standard NCBI codon table, so this branch
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is unreachable in practice. A test should be added here if
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non-standard codon tables are ever supported.
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"""
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def test_synonymous_start_is_unreachable_with_standard_codon_table(self):

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