diff --git a/malariagen_data/anopheles.py b/malariagen_data/anopheles.py index f7506c79e..142d3a2cd 100644 --- a/malariagen_data/anopheles.py +++ b/malariagen_data/anopheles.py @@ -526,6 +526,8 @@ def diversity_stats( cohorts: base_params.cohorts, cohort_size: base_params.cohort_size, region: base_params.regions, + min_cohort_size: Optional[base_params.min_cohort_size] = None, + max_cohort_size: Optional[base_params.max_cohort_size] = None, site_mask: Optional[base_params.site_mask] = base_params.DEFAULT, site_class: Optional[base_params.site_class] = None, sample_query: Optional[base_params.sample_query] = None, @@ -544,7 +546,7 @@ def diversity_stats( sample_query=sample_query, sample_query_options=sample_query_options, cohort_size=cohort_size, - min_cohort_size=None, + min_cohort_size=min_cohort_size, ) # Compute diversity stats for cohorts. @@ -554,6 +556,8 @@ def diversity_stats( cohort=(cohort_label, cohort_query), cohort_size=cohort_size, region=region, + min_cohort_size=min_cohort_size, + max_cohort_size=max_cohort_size, site_mask=site_mask, site_class=site_class, sample_sets=sample_sets,