reference.yaml

# @package dataset.REPLACE_DATASET
dataset_name: REPLACE_DATASET
pickle_normal: ${dataset_folder}/TESTXX/crops/2mm/REPLACE_CROP_NAME/mask/REPLACE_SIDEskeleton.pkl
numpy_all: ${dataset_folder}/TESTXX/crops/2mm/REPLACE_CROP_NAME/mask/REPLACE_SIDEskeleton.npy
subjects_all: ${dataset_folder}/TESTXX/crops/2mm/REPLACE_CROP_NAME/mask/REPLACE_SIDEskeleton_subject.csv
crop_dir: ${dataset_folder}/TESTXX/crops/2mm/REPLACE_CROP_NAME/mask/REPLACE_SIDEcrops
foldlabel_dir: ${dataset_folder}/TESTXX/crops/2mm/REPLACE_CROP_NAME/mask/REPLACE_SIDElabels
foldlabel_all: ${dataset_folder}/TESTXX/crops/2mm/REPLACE_CROP_NAME/mask/REPLACE_SIDElabel.npy
subjects_foldlabel_all: ${dataset_folder}/TESTXX/crops/2mm/REPLACE_CROP_NAME/mask/REPLACE_SIDElabel_subject.csv
distbottom_dir: ${dataset_folder}/TESTXX/crops/2mm/REPLACE_CROP_NAME/mask/REPLACE_SIDEdistbottom
distbottom_all: ${dataset_folder}/TESTXX/crops/2mm/REPLACE_CROP_NAME/mask/REPLACE_SIDEdistbottom.npy
extremity_dir: ${dataset_folder}/TESTXX/crops/2mm/REPLACE_CROP_NAME/mask/REPLACE_SIDEextremities
extremity_all: ${dataset_folder}/TESTXX/crops/2mm/REPLACE_CROP_NAME/mask/REPLACE_SIDEextremities.npy
subjects_extremity_all: ${dataset_folder}/TESTXX/crops/2mm/REPLACE_CROP_NAME/mask/REPLACE_SIDEextremities_subject.csv
subjects_distbottom_all: ${dataset_folder}/TESTXX/crops/2mm/REPLACE_CROP_NAME/mask/REPLACE_SIDEdistbottom_subject.csv
crop_file_suffix: _cropped_skeleton.nii.gz
pickle_benchmark: 
train_val_csv_file: ${dataset_folder}/TESTXX/crops/2mm/REPLACE_CROP_NAME/mask/REPLACE_SIDEskeleton_subject.csv
subject_labels_file: 
subject_column_name:
cutout_mask_path:
cutin_mask_path: ${dataset_folder}/TESTXX/crops/2mm/REPLACE_CROP_NAME/mask/REPLACE_SIDEmask.npy
flip_dataset: False
input_size: (1, REPLACE_SIZEX, REPLACE_SIZEY, REPLACE_SIZEZ)