Repositories list

• hot-knife

  Public
  Java

  •

  GNU General Public License v2.0

  •1010 forks•55 stars•11 issue•33 pull requests•Updated May 8, 2026May 8, 2026

• n5-viewer

  Public
  BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.

  Java

  •

  GNU General Public License v3.0

  •1212 forks•1919 stars•1010 issues•44 pull requests•Updated May 8, 2026May 8, 2026

• n5-hdf5

  Public
  Best effort N5 implementation on HDF5 files (despite the irony).

  Java

  •

  BSD 2-Clause "Simplified" License

  •1111 forks•77 stars•44 issues•11 pull request•Updated May 8, 2026May 8, 2026

• n5-zarr

  Public
  Zarr filesystem backend for N5

  Java

  •

  BSD 2-Clause "Simplified" License

  •1818 forks•1919 stars•1111 issues•33 pull requests•Updated May 8, 2026May 8, 2026

• n5-blosc

  Public
  Blosc compression for N5

  Java

  •

  BSD 2-Clause "Simplified" License

  •66 forks•00 stars•22 issues•22 pull requests•Updated May 8, 2026May 8, 2026

• n5-aws-s3

  Public
  N5 library implementation using Amazon Web Services S3 backend.

  Java

  •

  BSD 2-Clause "Simplified" License

  •77 forks•55 stars•22 issues•11 pull request•Updated May 8, 2026May 8, 2026

• n5-universe

  Public
  Functionality shared across all n5

  Java

  •

  BSD 2-Clause "Simplified" License

  •66 forks•11 star•88 issues•44 pull requests•Updated May 8, 2026May 8, 2026

• n5-google-cloud

  Public
  N5 library implementation using Google Cloud Storage backend.

  Java

  •

  BSD 2-Clause "Simplified" License

  •33 forks•11 star•33 issues•11 pull request•Updated May 8, 2026May 8, 2026

• render

  Public
  Render transformed image tiles

  Java

  •

  GNU General Public License v2.0

  •3434 forks•3636 stars•2929 issues•55 pull requests•Updated May 7, 2026May 7, 2026

• bigwarp

  Public
  A tool for manual pointwise deformable registration using bigdataviewer.

  Java

  •

  GNU General Public License v2.0

  •1414 forks•3636 stars•4242 issues•22 pull requests•Updated May 6, 2026May 6, 2026

• n5

  Public
  Not HDF5

  Java

  •

  BSD 2-Clause "Simplified" License

  •2424 forks•201201 stars•2222 issues•55 pull requests•Updated May 6, 2026May 6, 2026

• lens-correct

  Public
  Correcting lens-distortion in confocal stacks

  Java

  •

  GNU General Public License v3.0

  •11 fork•99 stars•00 issues•00 pull requests•Updated May 5, 2026May 5, 2026

• n5-ij

  Public
  ImageJ convenience layer for N5

  fijihdf5fiji-plugin+ 3

  fijihdf5fiji-pluginzarrn5ome-zarr-converter

  Java

  •

  BSD 2-Clause "Simplified" License

  •1313 forks•1919 stars•2828 issues•22 pull requests•Updated May 2, 2026May 2, 2026

• template-building

  Public
  Scripts and code relating to building anatomical templates.

  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •44 forks•1111 stars•1212 issues•22 pull requests•Updated Apr 29, 2026Apr 29, 2026

• organelle-mapping

  Public
  Python

  •

  MIT License

  •11 fork•00 stars•33 issues•00 pull requests•Updated Apr 24, 2026Apr 24, 2026

• n5-spark

  Public
  Spark-driven processing utilities for N5 datasets.

  Java

  •

  BSD 2-Clause "Simplified" License

  •77 forks•22 stars•1010 issues•11 pull request•Updated Apr 23, 2026Apr 23, 2026

• paintera-conversion-helper

  Public
  Script to assist conversion of n5 datasets to paintera-friendly formats

  Kotlin

  •44 forks•11 star•1010 issues•11 pull request•Updated Apr 15, 2026Apr 15, 2026

• gpg-attest

  Public
  browser extension + native messaging host + transparency log server that lets users attach GnuPG-signed attestations to digital content and record them on an ap…

  Go

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026

• paintera

  Public
  Java

  •

  GNU General Public License v2.0

  •1919 forks•112112 stars•6767 issues•22 pull requests•Updated Apr 13, 2026Apr 13, 2026

• fish-reg

  Public
  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 10, 2026Apr 10, 2026

• flyvis-gnn

  Public
  GNN for fly visual system connectivity recovery with LLM-guided exploration

  Python

  •

  Other

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 10, 2026Apr 10, 2026

• NeuralGraph

  Public
  Jupyter Notebook

  •

  Other

  •00 forks•00 stars•00 issues•11 pull request•Updated Apr 7, 2026Apr 7, 2026

• n5-imglib2

  Public
  Java

  •

  BSD 2-Clause "Simplified" License

  •88 forks•00 stars•55 issues•33 pull requests•Updated Apr 7, 2026Apr 7, 2026

• zap-model

  Public
  Model zapbench data

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 28, 2026Mar 28, 2026

• mirror-microscope

  Public
  Resources for processing images acquired by the Keller lab mirror microscope.

  Java

  •

  BSD 2-Clause "Simplified" License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 27, 2026Mar 27, 2026

• neural-gnn

  Public
  Python

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 23, 2026Mar 23, 2026

• n5-utils

  Public
  simple standalone BigDataViewer for multiple N5 (or HDF5) datasets

  Java

  •

  Other

  •1818 forks•1212 stars•1717 issues•11 pull request•Updated Mar 6, 2026Mar 6, 2026

• ParticleGraph

  Public
  Graph fitting particle trajectories

  Python

  •

  Other

  •22 forks•11 star•00 issues•00 pull requests•Updated Feb 11, 2026Feb 11, 2026

• MPM_pytorch

  Public
  Develop a full PyTorch version of Taichi-MPM

  Python

  •

  Other

  •00 forks•55 stars•00 issues•00 pull requests•Updated Feb 5, 2026Feb 5, 2026

• saalfx

  Public
  SaalFX: Extensions and tools for JavaFX, extracted from Paintera

  Kotlin

  •

  BSD 2-Clause "Simplified" License

  •22 forks•11 star•00 issues•00 pull requests•Updated Dec 16, 2025Dec 16, 2025