Merge pull request #937 from stan-dev/feature/fit-inits

Create inits from fit and draws objects

Author: andrjohns

.github/workflows/Test-coverage.yaml

@@ -63,6 +63,6 @@ jobs:
       - name: Test coverage (Windows)
         if: runner.os == 'Windows'
         run: |
-          options(covr.gcov = 'C:/rtools40/mingw64/bin/gcov.exe');
+          options(covr.gcov = 'C:/rtools44/mingw64/bin/gcov.exe');
           covr::codecov(type = "tests", function_exclusions = "sample_mpi")
         shell: Rscript {0}

.github/workflows/cmdstan-tarball-check.yaml

@@ -23,7 +23,7 @@ jobs:
       matrix:
         config:
           - {os: macOS-latest, r: 'release', rtools: ''}
-          - {os: windows-latest, r: 'release', rtools: '42'}
+          - {os: windows-latest, r: 'release', rtools: '44'}
           - {os: ubuntu-20.04, r: 'release', rtools: ''}
     env:
       R_REMOTES_NO_ERRORS_FROM_WARNINGS: true

DESCRIPTION

@@ -10,6 +10,7 @@ Authors@R:
       person(given = "Andrew", family = "Johnson", role = c("aut", "cre"),
              email = "andrew.johnson@arjohnsonau.com",
              comment = c(ORCID = "0000-0001-7000-8065")),
+      person(given = "Steve", family = "Bronder", role = "aut"),
       person(given = "Ben", family = "Bales", role = "ctb"),
       person(given = "Mitzi", family = "Morris", role = "ctb"),
       person(given = "Mikhail", family = "Popov", role = "ctb"),
@@ -18,7 +19,8 @@ Authors@R:
            email = "will.landau@gmail.com", comment = c(ORCID = "0000-0003-1878-3253")),
       person(given = "Jacob", family = "Socolar", role = "ctb"),
       person(given = "Martin", family = "Modrák", role = "ctb"),
-      person(given = "Steve", family = "Bronder", role = "ctb"))
+      person(given = "Ven", family = "Popov", role = "ctb")
+      )
 Description: A lightweight interface to 'Stan' <https://mc-stan.org>.
     The 'CmdStanR' interface is an alternative to 'RStan' that calls the command
     line interface for compilation and running algorithms instead of interfacing

NAMESPACE

@@ -6,6 +6,15 @@ S3method(as_draws,CmdStanMCMC)
 S3method(as_draws,CmdStanMLE)
 S3method(as_draws,CmdStanPathfinder)
 S3method(as_draws,CmdStanVB)
+S3method(process_init,"function")
+S3method(process_init,CmdStanLaplace)
+S3method(process_init,CmdStanMCMC)
+S3method(process_init,CmdStanMLE)
+S3method(process_init,CmdStanPathfinder)
+S3method(process_init,CmdStanVB)
+S3method(process_init,default)
+S3method(process_init,draws)
+S3method(process_init,list)
 export(as.CmdStanDiagnose)
 export(as.CmdStanGQ)
 export(as.CmdStanLaplace)
@@ -40,3 +49,4 @@ export(write_stan_json)
 export(write_stan_tempfile)
 import(R6)
 importFrom(posterior,as_draws)
+importFrom(stats,aggregate)