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pgsc_calc v2.2.0 ancestry subworkflow fails with --run_ancestry due to malformed target-channel tuples and unquoted meta.id in PLINK2_MAKEBED_TARGET

bugSomething isn't workingSomething isn't working

Status: Open.

#492 In PGScatalog/pgsc_calc;

· MichalGeN opened on Apr 17, 2026

Score report generation failed, worked previously

user-queryUser queries & requestsUser queries & requests

Status: Open.

#485 In PGScatalog/pgsc_calc;

· lydiarck opened on Mar 23, 2026

Support cloud storage URIs (gs://, s3://) in CSV samplesheets

enhancementNew feature or requestNew feature or request

user-queryUser queries & requestsUser queries & requests

Status: Open.

#484 In PGScatalog/pgsc_calc;

· ikhrustalev opened on Mar 23, 2026

Support BCF input format

enhancementNew feature or requestNew feature or request

user-queryUser queries & requestsUser queries & requests

Status: Open.

#483 In PGScatalog/pgsc_calc;

· ikhrustalev opened on Mar 23, 2026

storeDir race condition: parallel chromosome tasks fail with "Missing output file versions.yml" on Google Cloud Batch

bugSomething isn't workingSomething isn't working

user-queryUser queries & requestsUser queries & requests

Status: Open.

#481 In PGScatalog/pgsc_calc;

· ikhrustalev opened on Mar 23, 2026

Expected memory requirements

user-queryUser queries & requestsUser queries & requests

Status: Open.

#479 In PGScatalog/pgsc_calc;

· mmaalvarez opened on Mar 9, 2026

v2.2.0 conda solve issue

bugSomething isn't workingSomething isn't working

Status: Open.

#476 In PGScatalog/pgsc_calc;

· nebfield opened on Feb 20, 2026

FORMAT_SCOREFILES fails with memory issues when processing large numbers of scorefiles

user-queryUser queries & requestsUser queries & requests

Status: Open.

#475 In PGScatalog/pgsc_calc;

· katgorski opened on Feb 17, 2026

v3-alpha.1 - publish genotype cache after PGSC_CALC_LOAD finishes not as part of PGSC_CALC_SCORE

enhancementNew feature or requestNew feature or request

user-queryUser queries & requestsUser queries & requests

Status: Open.

#472 In PGScatalog/pgsc_calc;

· sritchie73 opened on Jan 23, 2026

Check resource limits in config file can be satisfied for each process at start of pipeline

enhancementNew feature or requestNew feature or request

user-queryUser queries & requestsUser queries & requests

Status: Open.

#470 In PGScatalog/pgsc_calc;

· sritchie73 opened on Jan 23, 2026

Error handling for misconfigured config files

bugSomething isn't workingSomething isn't working

user-queryUser queries & requestsUser queries & requests

Status: Open.

#469 In PGScatalog/pgsc_calc;

· sritchie73 opened on Jan 21, 2026

Summary error messages for end users

enhancementNew feature or requestNew feature or request

user-queryUser queries & requestsUser queries & requests

Status: Open.

#467 In PGScatalog/pgsc_calc;

· sritchie73 opened on Jan 20, 2026