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Add stacklevel 2 #1318

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Add stacklevel 2 #1318

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1 change: 1 addition & 0 deletions malariagen_data/anoph/cnv_data.py
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Original file line number Diff line number Diff line change
Expand Up @@ -626,6 +626,7 @@ def cnv_discordant_read_calls(
warnings.warn(
"Parameter 'contig' is deprecated; use 'contigs' instead.",
DeprecationWarning,
stacklevel=2,
)
contigs = contig

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2 changes: 2 additions & 0 deletions malariagen_data/anoph/sample_metadata.py
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Expand Up @@ -400,6 +400,7 @@ def _parse_surveillance_flags(
warnings.warn(
f"WARNING: The surveillance flags data contains null values for sample set {sample_set}",
UserWarning,
stacklevel=2,
)

# Restore the original warning filters.
Expand All @@ -419,6 +420,7 @@ def _parse_surveillance_flags(
warnings.warn(
f"WARNING: The surveillance flags data is missing for sample set {sample_set}",
UserWarning,
stacklevel=2,
)

# Restore the original warning filters.
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