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@ABI-Software Auckland Bioengineering Institute Software

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    95 repositories

    • mapintegratedvuer

      Public
      Integrated Map Vuer
      Vue
      •
      Apache License 2.0
      •13•1•3•13•Updated May 8, 2026May 8, 2026

    • flatmapvuer

      Public
      Vue component of Flatmap viewer
      Vue
      •
      Apache License 2.0
      •8•0•1•5•Updated May 8, 2026May 8, 2026

    • map-sidebar

      Public
      A side bar for user in sparc.science
      Vue
      •
      Apache License 2.0
      •9•0•1•5•Updated May 7, 2026May 7, 2026

    • scaffoldvuer

      Public
      PhysiomePortal Scaffold Viewer as a Vue Component
      Vue
      •
      Apache License 2.0
      •7•0•0•0•Updated May 7, 2026May 7, 2026

    • map-utilities

      Public
      Repository for common Vue 3 components used by MAP components
      Vue
      •
      Apache License 2.0
      •4•0•0•3•Updated May 6, 2026May 6, 2026

    • ZincJS

      Public
      JS interface to Zinc output for displaying 3D anatomical models
      JavaScript
      •
      MIT License
      •11•0•0•0•Updated May 4, 2026May 4, 2026

    • scicrunch-knowledge-testing

      Public
      Tests for checking the information on discover and elastic search are consistent.
      Python
      •
      Apache License 2.0
      •6•0•0•3•Updated Apr 29, 2026Apr 29, 2026

    • 2026-aps-test-data

      Public
      Test data for 2026 aps
      Python
      •0•0•1•0•Updated Apr 23, 2026Apr 23, 2026

    • .github

      Public
      An Introduction to ABI-Software
      Apache License 2.0
      •0•0•0•0•Updated Apr 21, 2026Apr 21, 2026

    • simulationvuer

      Public
      Vue component for a CellML-based simulation viewer.
      Vue
      •
      Apache License 2.0
      •6•1•3•0•Updated Apr 16, 2026Apr 16, 2026

    • Melanoma-web-tool

      Public
      A React + Vite + Three.js web application for exploring melanoma lymphatic pathway data through two interactive 3D tools:
      JavaScript
      •1•0•0•0•Updated Apr 8, 2026Apr 8, 2026

    • exf2mbfxml

      Public
      A small Python application and library to take EXF formatted files and transform it into MBF Bioscience XML.
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Apr 1, 2026Apr 1, 2026

    • sparc-app-2

      Public
      Vue
      •
      Apache License 2.0
      •12•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • scaffoldmaker

      Public
      Anatomical scaffold generator using Zinc
      Python
      •
      Other
      •36•1•6•7•Updated Mar 24, 2026Mar 24, 2026

    • get-latest-deployment-sha

      Public
      TypeScript
      •
      MIT License
      •2•0•0•0•Updated Mar 12, 2026Mar 12, 2026

    • mapclientplugins.segmentationstitcherstep

      Public
      MAP-Client plugin for interactively transforming and stitching segmentation files.
      Python
      •
      Other
      •4•0•0•1•Updated Mar 9, 2026Mar 9, 2026

    • mapclientplugins.scaffoldcreator

      Public
      MAP Client plugin for generating meshes via scripts using OpenCMISS-Zinc.
      Python
      •
      Apache License 2.0
      •22•0•5•2•Updated Mar 9, 2026Mar 9, 2026

    • segmentationstitcher

      Public
      Library for stitching together networks and contours segmented from multiple adjacent image blocks, including computing their relative transformations.
      Python
      •
      Apache License 2.0
      •4•0•0•0•Updated Mar 9, 2026Mar 9, 2026

    • scaffoldfitter

      Public
      A repository for fitting anatomical scaffolds to data.
      Python
      •
      Other
      •16•0•0•1•Updated Mar 9, 2026Mar 9, 2026

    • TARA-ScaffoldVuer

      Public
      TARA interface of ScaffoldVuer
      Vue
      •1•0•0•0•Updated Mar 2, 2026Mar 2, 2026

    • mapcore-gallery

      Public
      A gallery widget for MAPcore written for Vue3
      Vue
      •
      Apache License 2.0
      •6•0•0•0•Updated Feb 22, 2026Feb 22, 2026

    • plotvuer

      Public
      Process and display csv files as charts for vue. Designed specifically for use in the SPARC project
      Vue
      •
      Apache License 2.0
      •5•1•0•10•Updated Feb 7, 2026Feb 7, 2026

    • sparc-dataset-curation-test-resources

      Public
      Test resources for the SPARC dataset curation tool
      1•0•0•0•Updated Nov 11, 2025Nov 11, 2025

    • quick-landing-page

      Public template
      Quick Vue Landing Page
      JavaScript
      •1•0•0•0•Updated Nov 10, 2025Nov 10, 2025

    • svg-sprite

      Public
      Npm package for efficiently loading svg's in vue
      JavaScript
      •5•0•0•0•Updated Nov 5, 2025Nov 5, 2025

    • sparc-api

      Public
      SPARC Portal API
      Python
      •
      Apache License 2.0
      •15•0•0•3•Updated Oct 20, 2025Oct 20, 2025

    • mapclientplugins.mbfxml2exconverterstep

      Public
      A MAP Client plugin for converting MBF XML to ex form.
      Python
      •
      Other
      •5•0•0•0•Updated Oct 3, 2025Oct 3, 2025

    • AnnotationToCOMPOSER

      Public
      Python script to translate annotation to COMPOSER CSV format
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

    • ssvtools

      Public
      Utilities for extracting information form SPARC Subject-Specific Vagus Scaffolds.
      Python
      •
      Other
      •2•0•0•0•Updated Sep 3, 2025Sep 3, 2025

    • mapclientplugins.geometryfitter

      Public
      MAP Client plugin for geometric fitting of meshes using CMLibs Zinc.
      Python
      •
      Other
      •13•0•2•1•Updated Aug 23, 2025Aug 23, 2025
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