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@ghga-de GHGA - The German Human Genome-Phenome Archive

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    96 repositories

    • epic-docs

      Public
      Documentation and plans for service development milestones
      Shell
      •
      Apache License 2.0
      •1•1•0•2•Updated Apr 15, 2026Apr 15, 2026

    • data-portal

      Public
      GHGA Data Portal v2
      TypeScript
      •
      Other
      •0•0•0•1•Updated Apr 15, 2026Apr 15, 2026

    • em-transformation-service

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Apr 14, 2026Apr 14, 2026

    • ghga-metadata-schema

      Public
      Metadata schema for the German Human Genome-Phenome Archive (GHGA)
      metadata-schemalinkmlghga
      metadata-schemalinkmlghgafega
      Python
      •
      Apache License 2.0
      •5•15•5•1•Updated Apr 13, 2026Apr 13, 2026

    • nf-snvcalling

      Public
      a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow
      somatic-variantssomatic-mutationssnv
      somatic-variantssomatic-mutationssnvsnv-annotationdkfzghgasnv-callodcf
      Python
      •
      MIT License
      •0•3•8•1•Updated Apr 13, 2026Apr 13, 2026

    • datahub-test-bed

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Apr 10, 2026Apr 10, 2026

    • datahub-file-service

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 10, 2026Apr 10, 2026

    • dataset-information-service

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 9, 2026Apr 9, 2026

    • work-package-service

      Public
      Service that handles work packages for the CLI client
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 9, 2026Apr 9, 2026

    • ghga-connector

      Public
      CLI - Client to perform up- and download operations to and from a local ghga instance
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 8, 2026Apr 8, 2026

    • gh-action-ci

      Public
      Common steps executed within CI pipelines of GHGA.
      Dockerfile
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 8, 2026Apr 8, 2026

    • ghga-registry-service

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•2•Updated Apr 7, 2026Apr 7, 2026

    • charts

      Public
      Go Template
      •0•0•0•0•Updated Apr 1, 2026Apr 1, 2026

    • AQuA

      Public
      Automated Quality Assesment nextflow pipeline for GHGA datasets
      quality-control
      quality-control
      Nextflow
      •
      MIT License
      •2•0•5•0•Updated Mar 30, 2026Mar 30, 2026

    • file-services-backend

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Mar 30, 2026Mar 30, 2026

    • docs.ghga.de

      Public
      GHGA User Documentation
      Python
      •
      Apache License 2.0
      •2•1•1•5•Updated Mar 26, 2026Mar 26, 2026

    • microservice-repository-template

      Public template
      A template for Python-based microservice repositories with continuous update delivery.
      Python
      •
      Apache License 2.0
      •2•1•0•0•Updated Mar 24, 2026Mar 24, 2026

    • gh-action-fetch-tag

      Public
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 24, 2026Mar 24, 2026

    • gh-action-common

      Public
      Apache License 2.0
      •0•0•0•1•Updated Mar 24, 2026Mar 24, 2026

    • access-request-service

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 23, 2026Mar 23, 2026

    • notification-orchestration-service

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 23, 2026Mar 23, 2026

    • upload-orchestration-service

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 19, 2026Mar 19, 2026

    • hexkit

      Public
      A chassis library for building domain-focused, infrastructure-agnostic and event-driven microservices in Python.
      Python
      •
      Apache License 2.0
      •0•5•0•0•Updated Mar 17, 2026Mar 17, 2026

    • ghga-datasteward-kit

      Public
      GHGA-internal scripts to be used by data stewards.
      Python
      •
      Apache License 2.0
      •0•4•0•0•Updated Mar 13, 2026Mar 13, 2026

    • state-management-service

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 13, 2026Mar 13, 2026

    • auth-service

      Public
      Authentication service for the GHGA data portal used by the API gateway via the ExtAuth protocol
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Mar 13, 2026Mar 13, 2026

    • ghga-event-schemas

      Public
      A package that collects schemas used for messaging between GHGA service.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 11, 2026Mar 11, 2026

    • nf-aceseq

      Public
      a Nextflow ACE-Seq calling and annotation pipeline based on DKFZ-ODCF/ACEseqWorkflow
      somatic-variantsacesomatic-mutations
      somatic-variantsacesomatic-mutationssvdkfzghgaodcface-seq
      R
      •
      MIT License
      •0•2•6•0•Updated Mar 6, 2026Mar 6, 2026

    • metldata

      Public
      A framework for handling metadata based on ETL, CQRS, and event sourcing.
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Mar 2, 2026Mar 2, 2026

    • schemapack

      Public
      Make your JSON Schemas sociable and create linked data model.
      Python
      •
      Apache License 2.0
      •0•2•3•0•Updated Feb 16, 2026Feb 16, 2026
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